SMTL ID : 6iis.1

Complex structure of the HRP3 PWWP domain with both a 16-bp TA-rich DNA and an H3K36me3-containing histone peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-dimer

Ligands

2 x GLY- GLY- VAL- M3L- LYS: H3K36me3 peptide(Non-covalent)

GLY-GLY-VAL-M3L-LYS.1: 9 residues within 4Å: Chain A: M.20, Y.23, W.26, F.49, T.52, H.53, E.54, T.55, A.56 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.23 Hydrogen bonds: A:H.53, A:T.55, A:T.55 Salt bridges: A:E.54 pi-Cation interactions: A:Y.23, A:W.26, A:W.26, A:F.49 GLY-GLY-VAL-M3L-LYS.2: 10 residues within 4Å: Chain B: M.20, Y.23, W.26, F.49, T.52, H.53, E.54, T.55, A.56, F.57 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:H.53, B:T.55, B:T.55, B:F.57, B:F.57 Salt bridges: B:E.54 pi-Cation interactions: B:Y.23, B:W.26, B:W.26, B:F.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z. et al., Complex structure of the HRP3 PWWP domain with both a 16-bp TA-rich DNA and an H3K36me3-containing histone peptide. Nucleic Acids Res. (2019)

Release Date

2019-04-24

Peptides

Hepatoma-derived growth factor-related protein 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hepatoma-derived growth factor-related protein 3

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