SMTL ID : 6ije.1

Crystal structure of the type VI amidase immunity (Tai4) from Agrobacterium tumefaciens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.24, L.25, P.27 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.24, A:A.26 EDO.2: 4 residues within 4Å: Chain A: I.11, F.12, E.16, L.25 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.16 Water bridges: A:R.8, A:R.8 EDO.3: 4 residues within 4Å: Chain B: I.11, F.12, E.16, L.25 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.16 EDO.4: 6 residues within 4Å: Chain B: S.44, P.67, H.68, T.71 Ligands: EDO.5, EDO.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.44, B:P.67, B:T.71 Water bridges: B:T.71 EDO.5: 4 residues within 4Å: Chain B: H.68, T.71, D.72 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.71, B:D.72 EDO.6: 1 residues within 4Å: Chain B: P.32 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: K.42 Chain B: V.40, A.41, S.44 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fukuhara, S. et al., Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2018-12-19

Peptides

Tai4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Tai4