SMTL ID : 6ijy.2 (1 other biounit)

Crystal structure of human MTH1(G2K/C87A/C104S mutant) in complex with 8-oxo-dGTP determined using a crystal obtained under microgravity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.04 Å

Oligo State

monomer

Ligands

1 x 8DG: 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

8DG.1: 18 residues within 4Å: Chain A: Y.7, T.8, L.9, K.23, N.33, G.36, G.37, K.38, E.52, E.56, F.72, M.81, V.83, W.117, D.119, D.120, W.123 Ligands: NA.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.83 Hydrogen bonds: A:N.33, A:N.33, A:G.36, A:K.38 Water bridges: A:K.23, A:G.36 Salt bridges: A:K.23, A:D.119, A:D.120

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: F.72, W.117, D.119, D.120, W.123 Ligands: 8DG.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, T. et al., X-ray Structure Analysis of Human Oxidized Nucleotide Hydrolase MTH1 using Crystals Obtained under Microgravity. Int. J. Microgravity Sci. Appl. (2019)

Release Date

2019-02-20

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

7,8-dihydro-8-oxoguanine triphosphatase

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