SMTL ID : 6ikm.7 (17 other biounits)

Crystal structure of SpuE-Spermidine in complex with ScFv5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: L.331, R.334, R.338 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.334, A:R.338 SO4.2: 3 residues within 4Å: Chain A: K.327, R.330, R.334 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.327 Salt bridges: A:K.327, A:R.330, A:R.334

1 x SPD: SPERMIDINE(Non-covalent)

SPD.3: 12 residues within 4Å: Chain A: W.12, T.13, Y.15, N.40, S.60, E.159, Y.217, D.220, N.247, W.249, D.251, Y.287 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.12, A:Y.15, A:Y.217, A:W.249 Hydrogen bonds: A:N.40, A:S.60, A:E.159, A:D.220, A:D.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., A Potent Anti-SpuE Antibody Allosterically Inhibits Type III Secretion System and Attenuates Virulence of Pseudomonas Aeruginosa. J.Mol.Biol. (2019)

Release Date

2019-12-25

Peptides

Polyamine transport protein: A
ScFv5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
g

Polyamine transport protein

ScFv5

Related Entries With Identical Sequence