SMTL ID : 6ikx.1

UDP-glucose pyrophosphorylase from acinetobacter baumanii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: R.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.149, A:R.149 GOL.10: 7 residues within 4Å: Chain B: G.108, L.109, G.110, I.231, Q.232, L.233, T.234 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.109, B:G.110, B:I.231, B:L.233, B:T.234 GOL.18: 1 residues within 4Å: Chain C: R.149 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.149, C:R.149 GOL.27: 7 residues within 4Å: Chain D: G.108, L.109, G.110, I.231, Q.232, L.233, T.234 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:L.109, D:G.110, D:I.231, D:L.233, D:T.234

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: L.109, G.110, I.231, Q.232, L.233, T.234 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: Q.105 Chain C: R.68 Ligand excluded by PLIP SO4.4: 6 residues within 4Å: Chain A: G.11, L.12, G.13, T.14, R.15, K.25 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain A: P.8, V.9, A.10, G.11, Q.103, A.112 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain A: F.70, E.73, T.74, E.77 Ligand excluded by PLIP SO4.7: 1 residues within 4Å: Chain A: R.145 Ligand excluded by PLIP SO4.8: 1 residues within 4Å: Chain A: G.47 Ligand excluded by PLIP SO4.11: 1 residues within 4Å: Chain B: R.149 Ligand excluded by PLIP SO4.12: 6 residues within 4Å: Chain A: K.79, K.81 Chain B: G.13, T.14, R.15 Ligands: SO4.13 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain B: G.11, L.12, G.13, K.25 Ligands: SO4.12 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain B: R.250 Ligand excluded by PLIP SO4.15: 9 residues within 4Å: Chain A: K.21 Chain B: F.66, D.67, R.68, I.88, T.89, Q.90, I.91, V.92 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain C: L.109, G.110, I.231, Q.232, L.233, T.234 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain A: R.68 Chain C: Q.105 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain C: G.11, L.12, G.13, T.14, R.15, K.25 Ligand excluded by PLIP SO4.22: 6 residues within 4Å: Chain C: P.8, V.9, A.10, G.11, Q.103, A.112 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain C: F.70, E.73, T.74, E.77 Ligand excluded by PLIP SO4.24: 1 residues within 4Å: Chain C: R.145 Ligand excluded by PLIP SO4.25: 1 residues within 4Å: Chain C: G.47 Ligand excluded by PLIP SO4.28: 1 residues within 4Å: Chain D: R.149 Ligand excluded by PLIP SO4.29: 6 residues within 4Å: Chain C: K.79, K.81 Chain D: G.13, T.14, R.15 Ligands: SO4.30 Ligand excluded by PLIP SO4.30: 5 residues within 4Å: Chain D: G.11, L.12, G.13, K.25 Ligands: SO4.29 Ligand excluded by PLIP SO4.31: 1 residues within 4Å: Chain D: R.250 Ligand excluded by PLIP SO4.32: 9 residues within 4Å: Chain C: K.21 Chain D: F.66, D.67, R.68, I.88, T.89, Q.90, I.91, V.92 Ligand excluded by PLIP

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9: 5 residues within 4Å: Chain A: L.12, S.20, K.21 Chain B: N.69, L.72 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.12, B:N.69 EDO.16: 6 residues within 4Å: Chain B: V.132, E.161, V.163, Y.171, S.205, V.207 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.205, B:S.205 EDO.17: 7 residues within 4Å: Chain A: S.61 Chain B: S.22, P.24, S.58, K.59, A.60, S.61 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.61, B:S.61 Water bridges: B:A.60, A:S.61, A:S.61, A:S.61 EDO.26: 5 residues within 4Å: Chain C: L.12, S.20, K.21 Chain D: N.69, L.72 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:N.69, C:L.12 EDO.33: 6 residues within 4Å: Chain D: V.132, E.161, V.163, Y.171, S.205, V.207 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.161, D:S.205, D:S.205 EDO.34: 7 residues within 4Å: Chain C: S.61 Chain D: S.22, P.24, S.58, K.59, A.60, S.61 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:S.61, D:S.61 Water bridges: D:A.60, C:S.61, C:S.61, C:S.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, L.W., UDP-glucose pyrophosphorylase from acinetobacter baumanii. To be published

Release Date

2019-10-16

Peptides

UTP--glucose-1-phosphate uridylyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

UTP--glucose-1-phosphate uridylyltransferase

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