SMTL ID : 6ilr.1

Structure of Arabidopsis thaliana Ribokinase in unligand form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 9 residues within 4Å: Chain A: K.225, L.226, G.227, G.230, I.245, T.254, A.257, G.258, F.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.227, A:G.227 Water bridges: A:G.258 PG4.3: 10 residues within 4Å: Chain B: K.225, G.227, S.228, G.230, I.245, T.254, A.257, G.258, F.261, A.286 1 PLIP interactions: 1 interactions with chain B Water bridges: B:A.286

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: D.253, T.255, C.289, V.292, G.294, S.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.298, A:S.298 NA.4: 6 residues within 4Å: Chain B: D.253, T.255, C.289, V.292, G.294, S.298 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.255, B:S.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, P.A. et al., Crystal structure and mutational analyses of ribokinase from Arabidopsis thaliana. J. Struct. Biol. (2019)

Release Date

2019-03-13

Peptides

Ribokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribokinase

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