SMTL ID : 6imm.1 (2 other biounits)

Cryo-EM structure of an alphavirus, Sindbis virus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

1 x 8K6: Octadecane(Non-covalent)

8K6.1: 6 residues within 4Å: Chain G: Q.396, F.398 Chain I: Y.324, Y.331, T.332, I.335 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain G Hydrophobic interactions: I:Y.324, I:Y.331, I:I.335, G:F.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L. et al., Implication for alphavirus host-cell entry and assembly indicated by a 3.5 angstrom resolution cryo-EM structure. Nat Commun (2018)

Release Date

2019-03-13

Peptides

Spike glycoprotein E1: ADGH
Spike glycoprotein E2: BEIJ
Assembly protein E3: CFKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
N

D
T

G
Z

H
a

B
P

E
V

I
d

J
e

C
R

F
X

K
h

L
i

Spike glycoprotein E1

Spike glycoprotein E2

Assembly protein E3

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