- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: D.137
- Ligands: ZN.1
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:D.137, H2O.1, H2O.3, H2O.4, H2O.4, H2O.7
MG.3: 3 residues within 4Å:- Chain A: D.87, Y.89, H.90
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.87, A:Y.89, H2O.5
MG.14: 3 residues within 4Å:- Chain B: D.137, E.166
- Ligands: ZN.13
6 PLIP interactions:1 interactions with chain B, 5 Ligand-Water interactions- Metal complexes: B:D.137, H2O.11, H2O.11, H2O.12, H2O.13, H2O.15
- 2 x AJL: (1S)-1-[(1H-indol-3-yl)methyl]-6,7-dimethoxy-3,4-dihydroisoquinoline-2(1H)-carbaldehyde(Non-covalent)
AJL.4: 10 residues within 4Å:- Chain A: Y.95, H.96, M.209, N.257, T.269, I.272, F.276, M.293, Q.305, F.308
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.95, A:I.272, A:F.308
- Hydrogen bonds: A:Q.305
- pi-Stacking: A:F.308
AJL.15: 10 residues within 4Å:- Chain B: Y.95, H.96, M.209, N.257, T.269, I.272, F.276, M.293, Q.305, F.308
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:Y.95, B:I.272, B:F.308, B:F.308
- Hydrogen bonds: B:Q.305
- pi-Stacking: B:F.308
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 5 residues within 4Å:- Chain A: D.202, L.205, A.206, K.211, Q.247
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.247
- Water bridges: A:D.202, A:D.202
EDO.6: 4 residues within 4Å:- Chain A: K.198, I.201, D.202
- Chain B: N.160
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.198, A:D.202
- Water bridges: A:D.202
EDO.7: 4 residues within 4Å:- Chain A: L.262, D.337, N.338, W.341
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.338
EDO.8: 4 residues within 4Å:- Chain A: S.144, F.276, P.292, C.294
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:P.292
- Water bridges: A:Q.279, A:Q.279
EDO.9: 5 residues within 4Å:- Chain A: N.51, A.91, N.97, N.98, I.99
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.51, A:N.98
- Water bridges: A:H.90, A:N.98, A:R.271, A:R.271
EDO.10: 5 residues within 4Å:- Chain A: L.124, K.191, Q.192, S.195
- Ligands: EDO.11
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.195
- Water bridges: A:T.189, A:T.189
EDO.11: 6 residues within 4Å:- Chain A: T.122, L.124, E.125, S.195, M.199
- Ligands: EDO.10
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.122, A:S.195, A:S.195
EDO.12: 5 residues within 4Å:- Chain A: F.174, F.185, R.193, L.196, R.197
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.197
- Water bridges: A:R.193
EDO.16: 5 residues within 4Å:- Chain B: S.144, F.276, S.291, P.292, C.294
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.144, B:S.144, B:P.292
- Water bridges: B:Q.279
EDO.17: 5 residues within 4Å:- Chain A: N.160, S.162
- Chain B: K.198, I.201, D.202
1 PLIP interactions:1 interactions with chain A- Water bridges: A:S.162
EDO.18: 6 residues within 4Å:- Chain B: N.51, E.86, D.87, Y.89, A.91, N.98
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.87, B:A.91, B:N.98
- Water bridges: B:N.98
EDO.19: 3 residues within 4Å:- Chain B: N.145, Q.146, I.149
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.145
- Water bridges: B:Q.146, B:Q.146, B:D.161
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, X. et al., Structure-Aided Identification and Optimization of Tetrahydro-isoquinolines as Novel PDE4 Inhibitors Leading to Discovery of an Effective Antipsoriasis Agent. J.Med.Chem. (2019)
- Release Date
- 2019-10-23
- Peptides
- cAMP-specific 3',5'-cyclic phosphodiesterase 4D: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 2 x AJL: (1S)-1-[(1H-indol-3-yl)methyl]-6,7-dimethoxy-3,4-dihydroisoquinoline-2(1H)-carbaldehyde(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, X. et al., Structure-Aided Identification and Optimization of Tetrahydro-isoquinolines as Novel PDE4 Inhibitors Leading to Discovery of an Effective Antipsoriasis Agent. J.Med.Chem. (2019)
- Release Date
- 2019-10-23
- Peptides
- cAMP-specific 3',5'-cyclic phosphodiesterase 4D: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B