SMTL ID : 6ing.1

A complex structure of H25A mutant of glycosyltransferase with UDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 20 residues within 4Å: Chain A: Q.23, G.24, N.27, Y.278, S.280, G.282, S.283, V.309, W.338, V.339, P.340, Q.341, Q.342, H.356, G.358, W.359, N.360, S.361, E.364 Ligands: GOL.3 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:N.27, A:S.283, A:S.283, A:V.339, A:V.339, A:Q.341, A:N.360, A:N.360, A:S.361, A:S.361, A:E.364, A:E.364 Water bridges: A:G.24, A:S.283, A:T.284, A:W.338, A:Q.342, A:Q.342, A:Q.342 Salt bridges: A:H.356, A:H.356 pi-Stacking: A:W.338

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: R.12, R.13, K.39, G.40, F.41, V.452, S.456 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.13, A:K.39, A:G.40, A:S.456 GOL.3: 9 residues within 4Å: Chain A: G.24, T.146, S.147, G.358, W.359, N.360, D.380, N.384 Ligands: UDP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.146, A:W.359 Water bridges: A:G.24, A:Q.381 GOL.4: 8 residues within 4Å: Chain A: S.375, D.376, Y.397, L.398, E.399, N.400, G.401, W.402 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.375, A:D.376, A:L.398, A:G.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, T. et al., Hydrophobic recognition allows the glycosyltransferase UGT76G1 to catalyze its substrate in two orientations. Nat Commun (2019)

Release Date

2019-07-31

Peptides

UDP-glycosyltransferase 76G1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-glycosyltransferase 76G1