SMTL ID : 6ioz.1

Structural insights of idursulfase beta

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 8 residues within 4Å: Chain A: R.77, N.82, S.84, Q.88, E.92, Y.118, E.397, L.398 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.398 NAG-NAG-FUC.4: 4 residues within 4Å: Chain A: L.478, N.480, S.482, D.483 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: Y.75, R.77, V.78, N.111, T.113, Y.118 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: D.2, Q.289, N.292, S.293 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain A: D.224, G.225, N.501, N.504 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 9 residues within 4Å: Chain A: D.12, D.13, A.51, R.55, K.102, H.196, D.301, H.302, K.314 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.12, A:D.13, A:D.301, A:H.302

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain A: P.210, E.212, N.213 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.212 Hydrogen bonds: A:N.213 NAG.8: 1 residues within 4Å: Chain A: N.247 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H. et al., Structural insights of idursulfase beta. To Be Published

Release Date

2018-11-28

Peptides

Iduronate 2-sulfatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Iduronate 2-sulfatase