SMTL ID : 6iq5.1 (1 other biounit)

Crystal Structure of CYP1B1 and Inhibitor Having Azide Group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: R.50, M.65, A.66, W.74, R.78, M.85, I.260, A.263, S.264, T.267, L.268, F.327, V.328, T.331, I.332, H.334, Q.357, I.395, F.396, S.397, R.401, R.402, C.403, I.404, G.405, S.409 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:A.66, A:I.260, A:L.268, A:V.328, A:V.328, A:I.395, A:F.396, A:I.404 Hydrogen bonds: A:S.397 Salt bridges: A:R.50, A:R.50, A:R.78, A:H.334, A:R.401 Metal complexes: A:C.403

1 x AQ0: 2-(cis-4-azidocyclohexyl)-4H-naphtho[1,2-b]pyran-4-one(Non-covalent)

AQ0.2: 18 residues within 4Å: Chain A: V.59, S.60, S.64, A.66, F.67, N.161, F.164, L.197, N.198, F.201, D.259, G.262, A.263, T.267, V.328, I.332, L.442, T.443 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.59, A:A.66, A:F.67, A:F.67, A:F.164, A:L.197, A:F.201, A:F.201, A:F.201, A:A.263, A:T.267, A:I.332 Hydrogen bonds: A:S.60, A:S.64 pi-Stacking: A:F.164, A:F.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kubo, M. et al., Design and synthesis of selective CYP1B1 inhibitor via dearomatization of alpha-naphthoflavone. Bioorg. Med. Chem. (2019)

Release Date

2019-01-30

Peptides

Cytochrome P450 1B1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 1B1

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