SMTL ID : 6iqg.1

X-ray crystal structure of Fc and peptide complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 10 residues within 4Å: Chain A: F.6, F.8, K.11, T.25, V.29, D.30, Q.60, N.62, T.64, R.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.62, A:R.66, A:K.11 NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2: 10 residues within 4Å: Chain B: F.6, F.8, K.11, V.29, D.30, Q.60, N.62, T.64, R.66, K.99 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.11, B:K.11

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: K.99 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kishimoto, S. et al., Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format. Bioconjug. Chem. (2019)

Release Date

2019-02-13

Peptides

Immunoglobulin gamma-1 heavy chain: AB
18-mer peptide G(HCS)DCAYHRGELVWCT(HCS)H(NH2): CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Immunoglobulin gamma-1 heavy chain

18-mer peptide G(HCS)DCAYHRGELVWCT(HCS)H(NH2)

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