SMTL ID : 6iso.4 (5 other biounits)

Human SIRT3 Recognizing H3K4cr

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

monomer

Ligands

1 x ARG- THR- LYS- GLN- THR- ALA- ARG: ARG-THR-LYS-GLN-THR-ALA-ARG(Non-covalent)

ARG-THR-LYS-GLN-THR-ALA-ARG.1: 14 residues within 4Å: Chain A: V.172, F.173, F.174, G.175, E.176, P.177, L.178, E.203, V.204, E.205, P.206, S.209, W.233 Ligands: CRD.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.174, A:F.174, A:P.177, A:V.204, A:E.205, A:W.233 Hydrogen bonds: A:V.172, A:G.175, A:G.175, A:E.176, A:E.203, A:E.205, A:E.205, A:S.209, A:S.209 Salt bridges: A:E.205

1 x CRD: (2E)-BUT-2-ENAL(Non-covalent)

CRD.2: 7 residues within 4Å: Chain A: F.60, Q.108, I.110, H.128, V.172 Ligands: ARG-THR-LYS-GLN-THR-ALA-ARG.1, GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.60, A:F.60, A:F.60, A:I.110, A:H.128

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: G.25, A.26, Q.108, H.128, T.200, S.201, V.204 Ligands: CRD.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.26, A:T.200, A:T.200, A:S.201

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.136, V.138, Q.140, R.141 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:C.136, H2O.1, H2O.2, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bao, X. et al., Identification of 'erasers' for lysine crotonylated histone marks using a chemical proteomics approach. Elife (2014)

Release Date

2019-01-23

Peptides

NAD-dependent protein deacetylase sirtuin-3, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

NAD-dependent protein deacetylase sirtuin-3, mitochondrial

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