SMTL ID : 6iv5.1

Crystal structure of arabidopsis N6-mAMP deaminase MAPDA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: H.15, L.16, N.17, H.65, T.97, T.98, K.100 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.17, A:N.17, A:T.97, A:T.98, A:T.98, A:Y.112 Water bridges: A:T.98, A:T.98 Salt bridges: A:H.65, A:K.100

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.13, H.15, H.217, H.240, D.295 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.13, A:H.15, A:H.217, A:D.295, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, B. et al., Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing. Rna Biol. (2019)

Release Date

2019-02-27

Peptides

Adenosine/AMP deaminase family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenosine/AMP deaminase family protein