SMTL ID : 6iw6.2 (1 other biounit)

Crystal structure of the Lin28-interacting module of human TUT4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.55, C.58, H.71, H.77 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.55, A:C.58, A:H.71, A:H.77 ZN.2: 4 residues within 4Å: Chain A: C.256, H.443, H.445, H.447 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.256, A:H.443, A:H.445, A:H.447

1 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 5 residues within 4Å: Chain A: S.260, Q.261, H.445, H.446, H.448 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.261, A:H.446 Salt bridges: A:H.446, A:H.446, A:H.448

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: R.387, S.406, Q.407 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.387, A:R.387, A:Q.407 EDO.5: 4 residues within 4Å: Chain A: P.300, K.301, L.376, N.380 No protein-ligand interaction detected (PLIP) EDO.6: 6 residues within 4Å: Chain A: W.252, K.254, R.416, Y.423, F.424, F.439 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.416 EDO.7: 3 residues within 4Å: Chain A: L.351, K.355, Y.421 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.421 EDO.8: 5 residues within 4Å: Chain A: P.288, W.294, P.335, A.337, L.338 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.337

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamashita, S. et al., Crystal structure of the Lin28-interacting module of human terminal uridylyltransferase that regulates let-7 expression. Nat Commun (2019)

Release Date

2019-04-24

Peptides

Terminal uridylyltransferase 4,Terminal uridylyltransferase 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Terminal uridylyltransferase 4,Terminal uridylyltransferase 4

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