SMTL ID : 6iww.1

Cryo-EM structure of the S. typhimurium oxaloacetate decarboxylase beta-gamma sub-complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.1: 11 residues within 4Å: Chain A: K.128, V.129, S.133, V.135 Chain E: L.125, F.126, V.129, A.130, F.320 Ligands: LMT.2, LMT.3 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain A Hydrophobic interactions: E:F.126, E:V.129, E:A.130, E:F.320, A:V.135 LMT.2: 11 residues within 4Å: Chain A: L.125, F.126, V.129, A.130, F.320 Chain C: K.128, V.129, S.133, V.135 Ligands: LMT.1, LMT.3 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:F.126, A:V.129, A:A.130, A:F.320, C:V.135, C:V.135 LMT.3: 11 residues within 4Å: Chain C: L.125, F.126, V.129, A.130, F.320 Chain E: K.128, V.129, S.133, V.135 Ligands: LMT.1, LMT.2 6 PLIP interactions: 2 interactions with chain E, 4 interactions with chain C Hydrophobic interactions: E:V.135, E:V.135, C:F.126, C:V.129, C:A.130, C:F.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Structural insights into sodium transport by the oxaloacetate decarboxylase sodium pump. Elife (2020)

Release Date

2020-06-17

Peptides

Oxaloacetate decarboxylase beta chain: ACE
Probable oxaloacetate decarboxylase gamma chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Membrane

We predict this structure to be a membrane protein.
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Oxaloacetate decarboxylase beta chain

Probable oxaloacetate decarboxylase gamma chain

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