SMTL ID : 6iyb.1 (1 other biounit)

Structure of human ORP1 ANK - Rab7 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.27, T.45 Ligands: GTP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.27, A:T.45, H2O.1, H2O.2

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 26 residues within 4Å: Chain A: D.21, S.22, G.23, V.24, G.25, K.26, T.27, S.28, F.38, S.39, N.40, Q.41, Y.42, A.44, T.45, T.69, A.70, G.71, N.129, K.130, D.132, L.133, S.159, A.160, K.161 Ligands: MG.1 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:G.23, A:V.24, A:G.25, A:K.26, A:T.27, A:T.27, A:S.28, A:S.28, A:S.39, A:Y.42, A:T.45, A:G.71, A:N.129, A:K.130, A:K.130, A:A.160, A:K.161 Water bridges: A:T.27, A:N.40, A:Y.42, A:L.72, A:L.72 Salt bridges: A:K.26, A:K.26, A:D.132 pi-Stacking: A:F.38, A:F.38 pi-Cation interactions: A:K.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, J. et al., Structural basis of human ORP1-Rab7 interaction for the late-endosome and lysosome targeting. PLoS ONE (2019)

Release Date

2019-03-13

Peptides

Ras-related protein Rab-7a: A
Oxysterol-binding protein-related protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras-related protein Rab-7a

Oxysterol-binding protein-related protein 1

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