SMTL ID : 6izv.1

Averaged strand structure of a 15-stranded ParM filament from Clostridium botulinum

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: D.9, G.11, Y.12, G.13, Q.14, K.16, Q.168, G.197, F.198, M.229, Y.233, C.259, E.260, G.310, G.311, G.312, K.314, V.315 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.11, A:G.13, A:Q.14, A:Q.14, A:Q.14, A:F.198, A:Y.233, A:G.311, A:K.314, A:K.314, A:E.335 Salt bridges: A:K.16, A:K.16 ADP.3: 19 residues within 4Å: Chain B: D.9, G.11, Y.12, G.13, Q.14, K.16, Q.168, G.197, F.198, M.229, Y.233, C.259, E.260, G.310, G.311, G.312, K.314, V.315 Ligands: MG.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.13, B:Q.14, B:Q.14, B:Q.14, B:F.198, B:Y.233, B:G.311, B:K.314, B:K.314, B:E.335 Salt bridges: B:K.16, B:K.16

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: Q.168, D.195, N.338 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.195 MG.4: 4 residues within 4Å: Chain B: Q.168, D.195, N.338 Ligands: ADP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koh, F. et al., The structure of a 15-stranded actin-like filament from Clostridium botulinum. Nat Commun (2019)

Release Date

2019-06-19

Peptides

Putative plasmid segregation protein ParM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

Putative plasmid segregation protein ParM

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