SMTL ID : 6izy.1

The RNA-dependent RNA polymerase domain of dengue 2 NS5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: E.77, H.78, E.79, T.80 No protein-ligand interaction detected (PLIP) CO.2: 3 residues within 4Å: Chain A: S.547, M.551, W.593 No protein-ligand interaction detected (PLIP) CO.3: 2 residues within 4Å: Chain A: N.567, Y.672 No protein-ligand interaction detected (PLIP) CO.4: 1 residues within 4Å: Chain A: W.613 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: E.228, H.232, C.237, E.238, C.240 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.228, A:H.232, A:C.237, A:C.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimizu, H. et al., Discovery of a small molecule inhibitor targeting dengue virus NS5 RNA-dependent RNA polymerase. Plos Negl Trop Dis (2019)

Release Date

2019-12-25

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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