SMTL ID : 6j10.1

Ciclopirox inhibits Hepatitis B Virus secretion by blocking capsid assembly

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

3 x B4O: 6-cyclohexyl-4-methyl-1-oxidanyl-pyridin-2-one(Non-covalent)

B4O.1: 8 residues within 4Å: Chain B: L.19, P.20, F.23, F.24, P.25, W.102, Y.118, F.122 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.19, B:F.23, B:F.24, B:P.25 Hydrogen bonds: B:Y.118, B:Y.118 pi-Stacking: B:F.24, B:F.122 B4O.2: 8 residues within 4Å: Chain D: L.19, P.20, F.23, F.24, P.25, W.102, Y.118, F.122 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:L.19, D:F.23, D:F.24, D:P.25 Hydrogen bonds: D:Y.118, D:Y.118 pi-Stacking: D:F.24, D:F.122 B4O.3: 7 residues within 4Å: Chain F: L.19, F.23, F.24, P.25, W.102, Y.118, F.122 5 PLIP interactions: 5 interactions with chain F Hydrophobic interactions: F:L.19, F:F.23, F:F.24, F:P.25 Hydrogen bonds: F:Y.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, J.A. et al., Ciclopirox inhibits Hepatitis B Virus secretion by blocking capsid assembly. Nat Commun (2019)

Release Date

2019-04-17

Peptides

Capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Capsid protein