SMTL ID : 6j15.2 (1 other biounit)

Complex structure of GY-5 Fab and PD-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- MAN- FUC: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-FUC.1: 8 residues within 4Å: Chain A: N.31, T.32, S.33, E.34, F.36, F.55, Q.72, G.76 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.36, A:F.55 Hydrogen bonds: A:E.34, A:E.34, A:Q.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, D. et al., The FG Loop of PD-1 Serves as a "Hotspot" for Therapeutic Monoclonal Antibodies in Tumor Immune Checkpoint Therapy. Iscience (2019)

Release Date

2019-11-06

Peptides

Programmed cell death protein 1: A
GY-5 heavy chain Fab: B
GY-5 light chain Fab: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

C
L

Programmed cell death protein 1

GY-5 heavy chain Fab

GY-5 light chain Fab

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