SMTL ID : 6j1u.1

influenza virus nucleoprotein with a specific inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

3 x B7O: ~{N}-[4-[(4-~{tert}-butylphenyl)carbonylamino]phenyl]-2,3-dihydro-1,4-benzodioxine-6-carboxamide(Non-covalent)

B7O.1: 6 residues within 4Å: Chain A: A.284, S.287, Y.289, R.305, L.306, N.309 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.289, A:Y.289, A:R.305, A:L.306, A:N.309 Hydrogen bonds: A:S.287 B7O.2: 11 residues within 4Å: Chain A: I.41, T.45, S.50, D.51, G.54, R.55, G.282, S.283, V.285, A.286, G.288 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.41, A:I.41, A:A.286 Hydrogen bonds: A:G.54 B7O.3: 7 residues within 4Å: Chain C: I.217, E.220, R.221, N.224, K.227, R.236, R.243 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:R.221, C:R.221 Hydrogen bonds: C:E.220, C:E.220, C:N.224, C:K.227, C:R.236 pi-Cation interactions: C:K.227, C:R.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, F. et al., Discovery of a Novel Specific Inhibitor Targeting Influenza A Virus Nucleoprotein with Pleiotropic Inhibitory Effects on Various Steps of the Viral Life Cycle. J.Virol. (2021)

Release Date

2020-01-01

Peptides

Nucleoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Nucleoprotein

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