SMTL ID : 6j21.1

Crystal structure of the human NK1 substance P receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x GBQ: 5-[[(2~{R},3~{S})-2-[(1~{R})-1-[3,5-bis(trifluoromethyl)phenyl]ethoxy]-3-(4-fluorophenyl)morpholin-4-yl]methyl]-1,2-dihydro-1,2,4-triazol-3-one(Non-covalent)

GBQ.1: 18 residues within 4Å: Chain A: N.88, H.107, N.108, P.111, I.112, V.115, I.181, W.183, E.192, Y.195, H.196, V.199, T.200, W.367, F.370, H.371, F.374, M.397 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.111, A:P.111, A:V.199, A:W.367, A:F.370, A:F.370, A:F.374 pi-Cation interactions: A:H.196

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 9 residues within 4Å: Chain A: G.212, Y.215, T.216, G.219, I.220, W.223, I.357, V.360, A.364 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.360, A:A.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, S. et al., Human substance P receptor binding mode of the antagonist drug aprepitant by NMR and crystallography. Nat Commun (2019)

Release Date

2019-03-06

Peptides

Substance-P receptor,Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Substance-P receptor,Endolysin