SMTL ID : 6j23.1

Crystal structure of arabidopsis ADAL complexed with GMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 18 residues within 4Å: Chain A: H.15, L.16, N.17, F.58, F.61, H.65, T.97, T.98, K.100, D.160, S.189, G.190, P.192, H.217, E.220, N.295, D.296 Ligands: ZN.2 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:L.16, A:N.17, A:N.17, A:H.65, A:T.97, A:T.98, A:Y.112, A:Y.112, A:D.160, A:D.160, A:G.190, A:G.190, A:E.220 Water bridges: A:T.98, A:T.98, A:T.98, A:R.162, A:S.189, A:H.240, A:N.295, A:N.295 Salt bridges: A:H.65, A:K.100, A:E.220 pi-Stacking: A:H.15, A:F.58 pi-Cation interactions: A:H.217

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.13, H.15, H.217, H.240, N.295 Ligands: 5GP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.13, A:H.15, A:H.217, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, B. et al., Structure ofArabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications forN6-methyl-AMP recognition and processing. Rna Biol. (2019)

Release Date

2019-02-27

Peptides

Adenosine/AMP deaminase family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenosine/AMP deaminase family protein

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