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SMTL ID : 6j2v.3
(2 other biounits)
GABA aminotransferase from Corynebacterium glutamicum
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.90 Å
Oligo State
homo-dimer
Ligands
2 x
PLZ
:
4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]BUTANOIC ACID
(Non-covalent)
PLZ.1:
17 residues within 4Å:
Chain A:
I.94
,
S.154
,
G.155
,
A.156
,
Y.182
,
H.183
,
G.184
,
R.185
,
E.251
,
E.256
,
D.284
,
I.286
,
Q.287
,
K.313
Chain B:
M.123
,
G.341
,
T.342
20
PLIP interactions
:
15 interactions with chain A
,
5 interactions with chain B
Hydrophobic interactions:
A:I.94
,
A:Y.182
,
A:E.251
,
A:I.286
Hydrogen bonds:
A:S.154
,
A:G.155
,
A:A.156
,
A:Y.182
,
A:Q.287
,
A:K.313
,
A:K.313
,
A:K.313
,
B:G.341
,
B:T.342
,
B:T.342
,
B:T.342
Water bridges:
A:S.154
,
A:S.154
,
B:Y.343
Salt bridges:
A:R.185
PLZ.5:
17 residues within 4Å:
Chain A:
M.123
,
G.341
,
T.342
Chain B:
I.94
,
S.154
,
G.155
,
A.156
,
Y.182
,
H.183
,
G.184
,
R.185
,
E.251
,
E.256
,
D.284
,
I.286
,
Q.287
,
K.313
19
PLIP interactions
:
15 interactions with chain B
,
4 interactions with chain A
Hydrophobic interactions:
B:I.94
,
B:Y.182
,
B:E.251
,
B:I.286
Hydrogen bonds:
B:G.155
,
B:A.156
,
B:Y.182
,
B:Q.287
,
B:K.313
,
B:K.313
,
B:K.313
,
A:G.341
,
A:T.342
,
A:T.342
Water bridges:
B:S.154
,
B:S.154
,
A:Y.343
Salt bridges:
B:R.185
pi-Stacking:
B:Y.182
4 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.2:
9 residues within 4Å:
Chain A:
C.121
,
F.122
,
M.123
,
Y.130
,
L.151
,
G.340
,
G.341
,
G.344
Chain B:
L.63
7
PLIP interactions
:
7 interactions with chain A
Hydrogen bonds:
A:F.122
,
A:M.123
,
A:Y.130
,
A:L.151
,
A:L.151
,
A:G.344
Water bridges:
A:Y.343
GOL.3:
5 residues within 4Å:
Chain A:
P.334
,
G.335
,
A.338
Chain B:
S.201
,
G.202
3
PLIP interactions
:
2 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:G.335
Water bridges:
A:P.336
,
B:R.61
GOL.4:
7 residues within 4Å:
Chain A:
S.201
,
G.202
Chain B:
A.168
,
A.333
,
P.334
,
G.335
,
A.338
3
PLIP interactions
:
1 interactions with chain A
,
2 interactions with chain B
Water bridges:
A:S.201
,
B:A.333
Hydrogen bonds:
B:G.335
GOL.6:
9 residues within 4Å:
Chain A:
L.63
Chain B:
C.121
,
F.122
,
M.123
,
Y.130
,
L.151
,
G.340
,
G.341
,
G.344
7
PLIP interactions
:
7 interactions with chain B
Hydrogen bonds:
B:M.123
,
B:Y.130
,
B:L.151
,
B:G.341
,
B:G.344
Water bridges:
B:F.122
,
B:Y.343
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Hong, J. et al., Crystal structure of gamma-aminobutyrate aminotransferase in complex with a PLP-GABA adduct from Corynebacterium glutamicum. Biochem.Biophys.Res.Commun. (2019)
Release Date
2020-01-15
Peptides
PLP-dependent aminotransferases:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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PLP-dependent aminotransferases
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Related Entries With Identical Sequence
6j2v.1
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6j2v.2
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