SMTL ID : 6j38.1

Crystal structure of CmiS2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: G.27, G.28, G.29, V.30, I.31, V.49, D.50, P.51, E.52, A.54, S.55, K.56, A.57, S.58, V.60, S.61, A.62, G.63, M.64, R.193, A.194, A.223, G.224, W.226, G.246, Y.272, G.326, R.328, P.329, H.352, S.353, R.354, I.355, G.356, V.357, Q.358 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:V.60, A:R.328 Hydrogen bonds: A:G.28, A:G.28, A:G.29, A:I.31, A:A.54, A:S.55, A:S.55, A:A.57, A:S.58, A:S.58, A:S.61, A:S.61, A:A.62, A:G.63, A:M.64, A:M.64, A:A.194, A:A.194, A:S.353, A:G.356, A:V.357, A:Q.358 pi-Cation interactions: A:R.328 FAD.2: 35 residues within 4Å: Chain B: G.27, G.29, V.30, I.31, V.49, D.50, P.51, E.52, A.54, K.56, A.57, S.58, V.60, S.61, A.62, G.63, M.64, R.193, A.194, A.223, G.224, W.226, G.246, I.248, Y.272, A.285, G.326, R.328, P.329, S.353, R.354, I.355, G.356, V.357, Q.358 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:V.60, B:I.248, B:A.285, B:R.328 Hydrogen bonds: B:G.29, B:I.31, B:E.52, B:A.54, B:A.57, B:S.58, B:S.58, B:S.61, B:S.61, B:A.62, B:G.63, B:M.64, B:M.64, B:A.194, B:A.194, B:G.224, B:S.353, B:G.356, B:V.357, B:Q.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawasaki, D. et al., Structural Analysis of the Glycine Oxidase Homologue CmiS2 Reveals a Unique Substrate Recognition Mechanism for Formation of a beta-Amino Acid Starter Unit in Cremimycin Biosynthesis. Biochemistry (2019)

Release Date

2019-06-12

Peptides

FAD-dependent glycine oxydase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FAD-dependent glycine oxydase

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