SMTL ID : 6j5t.1

Reconstitution and structure of a plant NLR resistosome conferring immunity

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.40 Å

Oligo State

hetero-5-5-5-mer

Ligands

10 x U5P: URIDINE-5'-MONOPHOSPHATE(Covalent)

U5P.1: 9 residues within 4Å: Chain A: T.250, H.251, S.253 Chain B: D.69, V.70, K.193, F.212, G.230, T.231 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.69, B:D.69, B:K.193, B:T.231 U5P.2: 4 residues within 4Å: Chain A: T.254 Chain B: H.99, R.100, W.227 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.100 U5P.4: 9 residues within 4Å: Chain D: T.250, H.251, S.253 Chain E: D.69, V.70, K.193, F.212, G.230, T.231 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:D.69, E:D.69, E:K.193, E:T.231 U5P.5: 5 residues within 4Å: Chain D: T.254 Chain E: Y.71, H.99, R.100, W.227 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Y.71, E:Y.71 Salt bridges: E:R.100 U5P.7: 9 residues within 4Å: Chain G: T.250, H.251, S.253 Chain H: D.69, V.70, K.193, F.212, G.230, T.231 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:D.69, H:D.69, H:K.193, H:T.231, H:T.231 U5P.8: 5 residues within 4Å: Chain G: T.254 Chain H: Y.71, H.99, R.100, W.227 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:Y.71, H:Y.71 Salt bridges: H:R.100 U5P.10: 9 residues within 4Å: Chain J: T.250, H.251, S.253 Chain K: D.69, V.70, K.193, F.212, G.230, T.231 4 PLIP interactions: 4 interactions with chain K Hydrogen bonds: K:D.69, K:D.69, K:K.193, K:T.231 U5P.11: 5 residues within 4Å: Chain J: T.254 Chain K: Y.71, H.99, R.100, W.227 3 PLIP interactions: 3 interactions with chain K Hydrogen bonds: K:Y.71, K:Y.71 Salt bridges: K:R.100 U5P.13: 9 residues within 4Å: Chain M: T.250, H.251, S.253 Chain N: D.69, V.70, K.193, F.212, G.230, T.231 4 PLIP interactions: 4 interactions with chain N Hydrogen bonds: N:D.69, N:D.69, N:K.193, N:T.231 U5P.14: 5 residues within 4Å: Chain M: T.254 Chain N: Y.71, H.99, R.100, W.227 3 PLIP interactions: 3 interactions with chain N Hydrogen bonds: N:Y.71, N:Y.71 Salt bridges: N:R.100

5 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)

DTP.3: 16 residues within 4Å: Chain C: R.149, Q.159, V.160, V.161, L.163, G.192, L.193, G.194, K.195, T.196, T.197, R.297, L.326, P.359, L.360, K.363 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:T.197 Hydrogen bonds: C:V.161, C:V.161, C:G.192, C:L.193, C:G.194, C:K.195, C:T.196, C:T.196, C:T.197 Salt bridges: C:R.149, C:K.195, C:K.195, C:R.297 DTP.6: 16 residues within 4Å: Chain F: R.149, Q.159, V.160, V.161, L.163, G.192, L.193, G.194, K.195, T.196, T.197, R.297, L.326, P.359, L.360, K.363 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:T.197 Hydrogen bonds: F:V.161, F:V.161, F:G.192, F:L.193, F:G.194, F:K.195, F:T.196, F:T.196, F:T.197 Salt bridges: F:R.149, F:K.195, F:K.195, F:R.297 DTP.9: 16 residues within 4Å: Chain I: R.149, Q.159, V.160, V.161, L.163, G.192, L.193, G.194, K.195, T.196, T.197, R.297, L.326, P.359, L.360, K.363 14 PLIP interactions: 14 interactions with chain I Hydrophobic interactions: I:T.197 Hydrogen bonds: I:V.161, I:V.161, I:G.192, I:L.193, I:G.194, I:K.195, I:T.196, I:T.196, I:T.197 Salt bridges: I:R.149, I:K.195, I:K.195, I:R.297 DTP.12: 16 residues within 4Å: Chain L: R.149, Q.159, V.160, V.161, L.163, G.192, L.193, G.194, K.195, T.196, T.197, R.297, L.326, P.359, L.360, K.363 14 PLIP interactions: 14 interactions with chain L Hydrophobic interactions: L:T.197 Hydrogen bonds: L:V.161, L:V.161, L:G.192, L:L.193, L:G.194, L:K.195, L:T.196, L:T.196, L:T.197 Salt bridges: L:R.149, L:K.195, L:K.195, L:R.297 DTP.15: 16 residues within 4Å: Chain O: R.149, Q.159, V.160, V.161, L.163, G.192, L.193, G.194, K.195, T.196, T.197, R.297, L.326, P.359, L.360, K.363 14 PLIP interactions: 14 interactions with chain O Hydrophobic interactions: O:T.197 Hydrogen bonds: O:V.161, O:V.161, O:G.192, O:L.193, O:G.194, O:K.195, O:T.196, O:T.196, O:T.197 Salt bridges: O:R.149, O:K.195, O:K.195, O:R.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Reconstitution and structure of a plant NLR resistosome conferring immunity. Science (2019)

Release Date

2019-03-20

Peptides

Probable serine/threonine-protein kinase PBL2: ADGJM
Protein kinase superfamily protein: BEHKN
Disease resistance RPP13-like protein 4: CFILO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

D
A

G
D

J
J

M
M

B
H

E
B

H
E

K
K

N
N

C
G

F
C

I
F

L
L

O
O

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Probable serine/threonine-protein kinase PBL2

Protein kinase superfamily protein

Disease resistance RPP13-like protein 4

Related Entries With Identical Sequence