SMTL ID : 6j6l.1

Crystal structure of mouse Ryanodine Receptor 2 SPRY1 Domain (650-844) disease mutant I784F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

6 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 2 residues within 4Å: Chain A: E.134, N.135 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.134, A:E.134 IPA.2: 6 residues within 4Å: Chain A: S.7, F.148, A.150, G.151, K.153, H.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.151 Water bridges: A:S.7 IPA.3: 9 residues within 4Å: Chain A: F.14, T.54, Y.57, L.141 Chain B: Y.60, P.61, G.64, E.65, E.66 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.60, A:F.14, A:Y.57, A:L.141 Water bridges: B:P.61, B:G.64 IPA.4: 8 residues within 4Å: Chain B: S.121, F.122, R.123, P.128, V.129, Q.130, G.131, M.132 2 PLIP interactions: 2 interactions with chain B Water bridges: B:F.122, B:V.129 IPA.5: 7 residues within 4Å: Chain A: H.190, S.191, R.192 Chain B: M.9, V.188, E.189, H.190 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.188, B:H.190 IPA.6: 8 residues within 4Å: Chain B: V.17, S.18, E.19, G.20, S.21, A.22, Q.23, K.25 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.20, B:A.22 Water bridges: B:Q.23, B:K.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Touat-Hamici, Z. et al., A SPRY1 domain cardiac ryanodine receptor variant associated with short-coupled torsade de pointes. Sci Rep (2021)

Release Date

2020-01-15

Peptides

Ryanodine receptor 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ryanodine receptor 2