SMTL ID : 6j74.1

Complex of GGTaseIII and full-length Ykt6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.21 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: K.135, Y.191 Chain B: K.240, Y.246, R.286 Ligands: PO4.2 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.286 Salt bridges: B:K.240, A:K.135 PO4.2: 8 residues within 4Å: Chain A: K.135, S.193, Y.195 Chain B: H.195, R.237, K.240, Y.246 Ligands: PO4.1 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Y.195, B:Y.246 Salt bridges: A:K.135, B:H.195, B:R.237, B:K.240

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain B: D.243, C.245, D.285, H.295 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.243, B:H.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goto-Ito, S. et al., Complex of GGTaseIII and full-length Ykt6. To Be Published

Release Date

2020-01-22

Peptides

Protein prenyltransferase alpha subunit repeat-containing protein 1: A
Geranylgeranyl transferase type-2 subunit beta: B
Synaptobrevin homolog YKT6: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Protein prenyltransferase alpha subunit repeat-containing protein 1

Geranylgeranyl transferase type-2 subunit beta

Synaptobrevin homolog YKT6

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