SMTL ID : 6j7y.1

Human mitochondrial Oligoribonuclease in complex with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x DT- DT: DNA (5'-D(P*TP*T)-3')(Non-covalent)

DT-DT.1: 15 residues within 4Å: Chain A: L.15, E.16, M.17, L.20, W.63, C.64, H.68, S.110, E.113, S.137, H.161 Chain B: Y.131, R.132 Ligands: MG.2, MG.3 Protein-ligand interaction information (PLIP) not available

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.14, L.15, E.16, D.166 Ligands: DT-DT.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.16, A:D.166 MG.3: 5 residues within 4Å: Chain A: D.14, N.109, S.110 Ligands: DT-DT.1, DT-DT.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chu, L.Y. et al., Structural insights into nanoRNA degradation by human Rexo2. Rna (2019)

Release Date

2019-08-28

Peptides

Oligoribonuclease, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Oligoribonuclease, mitochondrial