SMTL ID : 6j87.2 (1 other biounit)

Crystal structure of HinD with NMFT and NO

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: L.77, V.104, M.105, H.112, R.116, F.123, I.168, L.252, A.255, G.256, T.259, T.260, Q.263, T.306, F.307, R.309, A.359, F.360, G.361, L.364, H.365, H.366, C.367, L.368, G.369, V.373 Ligands: NO.2, B9L.3 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:V.104, A:M.105, A:F.123, A:I.168, A:L.252, A:A.255, A:T.259, A:Q.263, A:L.368, A:V.373 Hydrogen bonds: A:F.307 Water bridges: A:H.365 Salt bridges: A:H.112, A:R.116, A:R.309, A:H.365 pi-Stacking: A:F.360 Metal complexes: A:C.367

1 x NO: NITRIC OXIDE(Non-covalent)

NO.2: 4 residues within 4Å: Chain A: A.255, T.259 Ligands: HEM.1, B9L.3 No protein-ligand interaction detected (PLIP)

1 x B9L: N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-Nalpha-methyl-L-phenylalaninamide(Non-covalent)

B9L.3: 13 residues within 4Å: Chain A: T.102, M.105, F.189, F.190, V.251, L.254, I.302, V.305, T.306, F.307, Q.407 Ligands: HEM.1, NO.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:M.105, A:V.251, A:L.254, A:I.302, A:I.302 Hydrogen bonds: A:F.189 pi-Stacking: A:F.307, A:F.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, F. et al., Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis. Nat.Chem.Biol. (2019)

Release Date

2019-08-07

Peptides

Nocardicin N-oxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nocardicin N-oxygenase

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