SMTL ID : 6j8f.1

Crystal structure of SVBP-VASH1 with peptide mimic the C-terminal of alpha-tubulin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU- GLY- GLU- CYS- TYR: 8-mer peptide(Non-covalent)

GLU-GLY-GLU-CYS-TYR.1: 14 residues within 4Å: Chain B: Y.66, K.78, K.100, C.101, S.124, F.134, R.135, H.136, I.137, S.153, R.154, L.158, Y.179, H.184 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.134, B:F.134, B:R.154 Hydrogen bonds: B:Y.66, B:K.100, B:S.124, B:R.135, B:R.135, B:R.135, B:H.136, B:R.154 Water bridges: B:L.102, B:H.184, B:H.184 Salt bridges: B:K.78, B:H.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liao, S. et al., Molecular basis of vasohibins-mediated detyrosination and its impact on spindle function and mitosis. Cell Res. (2019)

Release Date

2019-06-19

Peptides

Small vasohibin-binding protein: A
Tubulinyl-Tyr carboxypeptidase 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Small vasohibin-binding protein

Tubulinyl-Tyr carboxypeptidase 1

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