SMTL ID : 6jbu.1

High resolution crystal structure of human FLRT3 LRR domain in complex with mouse CIRL3 Olfactomedin like domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: R.78, E.96, R.97 Chain B: Q.91, D.115, D.116 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.91, B:D.116, A:E.96 Water bridges: B:D.115, B:D.115, B:S.141, B:R.160, A:E.96 Salt bridges: A:R.78, A:R.97 PO4.2: 8 residues within 4Å: Chain A: W.47, P.49, Y.50, V.79, D.80, E.96, H.123, K.133 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.50 Water bridges: A:T.48, A:E.96, A:K.133, A:K.133 Salt bridges: A:H.123, A:K.133

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: D.137, N.185, A.186, V.240 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.137, A:A.186 Water bridges: A:N.185 NA.4: 2 residues within 4Å: Chain A: D.4, E.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.4, A:E.7 Water bridges: A:N.247 NA.9: 6 residues within 4Å: Chain A: G.83, F.84, V.85, D.137, L.138, D.241 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.83, A:L.138 Water bridges: A:D.241

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: D.124, W.130, G.131, G.132 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Water bridges: B:R.66 Hydrogen bonds: A:D.124, A:W.130, A:G.132 EDO.6: 4 residues within 4Å: Chain A: P.76, I.110, K.111 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.111 EDO.7: 4 residues within 4Å: Chain A: P.76, H.77, K.111 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.77, A:E.114 EDO.8: 4 residues within 4Å: Chain A: D.25, H.26, R.51 Chain B: K.230 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.230, B:K.230, A:R.51

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 1 residues within 4Å: Chain B: N.205 No protein-ligand interaction detected (PLIP) NAG.11: 5 residues within 4Å: Chain B: R.250, Q.251, D.274, N.275, K.305 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.251, B:N.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., High resolution crystal structure of human FLRT3 LRR domain in complex with mouse CIRL3 Olfactomedin like domain. To Be Published

Release Date

2020-01-29

Peptides

Adhesion G protein-coupled receptor L3: A
Leucine-rich repeat transmembrane protein FLRT3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adhesion G protein-coupled receptor L3

Leucine-rich repeat transmembrane protein FLRT3