SMTL ID : 6jcf.1

Cryogenic structure of HIV-1 Integrase catalytic core domain by synchrotron

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

4 x CAC: CACODYLATE ION(Non-covalent)

CAC.1: 5 residues within 4Å: Chain A: D.15, C.16, E.43, T.48, N.71 4 PLIP interactions: 4 interactions with chain A Water bridges: A:L.14, A:C.16, A:C.16, A:T.66 CAC.2: 6 residues within 4Å: Chain A: V.64, F.72, C.81, I.86, K.87, Q.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.86 CAC.3: 5 residues within 4Å: Chain B: D.15, C.16, E.43, T.48, N.71 4 PLIP interactions: 4 interactions with chain B Water bridges: B:L.14, B:D.15, B:D.15, B:T.66 CAC.4: 6 residues within 4Å: Chain B: V.64, F.72, C.81, I.86, K.87, Q.88 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.H. et al., Non-Cryogenic Structure and Dynamics of HIV-1 Integrase Catalytic Core Domain by X-ray Free-Electron Lasers. Int J Mol Sci (2019)

Release Date

2019-07-17

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Integrase

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