SMTL ID : 6jdo.1

Crystal structure of N-acetyl mannosmaine kinase with AMP-PNP from Pasteurella multocida

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 9 residues within 4Å: Chain A: S.130, T.131, G.180, P.196, K.197, F.200, S.242, V.243, A.246 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.130, A:S.130, A:T.131, A:S.242 Water bridges: A:E.184, A:E.184 ANP.4: 10 residues within 4Å: Chain B: S.130, T.131, G.180, R.181, P.196, K.197, F.200, S.242, V.243, A.246 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.130, B:T.131, B:T.131, B:T.131, B:K.197, B:S.242 Water bridges: B:G.132

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: Y.264 Chain B: H.156, C.166, C.168, G.169, R.170 No protein-ligand interaction detected (PLIP) CA.3: 6 residues within 4Å: Chain A: H.156, C.166, C.168, G.169, R.170 Chain B: Y.264 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:Y.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thanuja, G. et al., Structure and Function of N‐Acetylmannosamine Kinases from Pathogenic Bacteria. Acs Omega (2020)

Release Date

2020-02-05

Peptides

N-acetylmannosamine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-acetylmannosamine kinase