SMTL ID : 6jdu.1

Crystal structure of PRRSV nsp10 (helicase)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: T.18, C.20, H.32, H.34, C.35 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:H.32, A:H.34, A:C.35 ZN.2: 4 residues within 4Å: Chain A: C.7, C.10, C.25, H.28 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:C.25, A:H.28 ZN.3: 4 residues within 4Å: Chain A: C.41, H.43, C.50, C.53 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:H.43, A:C.50, A:C.53

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 2 residues within 4Å: Chain A: E.66, E.69 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.66, A:E.69, A:E.69 CA.5: 1 residues within 4Å: Chain A: E.52 No protein-ligand interaction detected (PLIP) CA.6: 1 residues within 4Å: Chain A: P.319 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, C. et al., Helicase of Type 2 Porcine Reproductive and Respiratory Syndrome Virus Strain HV Reveals a Unique Structure. Viruses (2020)

Release Date

2020-02-05

Peptides

PP1b: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PP1b

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