- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-24-mer
- Ligands
- 120 x CD: CADMIUM ION(Non-covalent)
- 48 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 2 residues within 4Å:- Chain A: Q.6, N.7
Ligand excluded by PLIPSO4.7: 4 residues within 4Å:- Chain A: K.143, D.146, H.147
- Chain P: E.45
Ligand excluded by PLIPSO4.16: 2 residues within 4Å:- Chain B: Q.6, N.7
Ligand excluded by PLIPSO4.17: 4 residues within 4Å:- Chain B: K.143, D.146, H.147
- Chain O: E.45
Ligand excluded by PLIPSO4.26: 2 residues within 4Å:- Chain C: Q.6, N.7
Ligand excluded by PLIPSO4.27: 4 residues within 4Å:- Chain C: K.143, D.146, H.147
- Chain M: E.45
Ligand excluded by PLIPSO4.36: 2 residues within 4Å:- Chain D: Q.6, N.7
Ligand excluded by PLIPSO4.37: 4 residues within 4Å:- Chain D: K.143, D.146, H.147
- Chain N: E.45
Ligand excluded by PLIPSO4.46: 2 residues within 4Å:- Chain E: Q.6, N.7
Ligand excluded by PLIPSO4.47: 4 residues within 4Å:- Chain E: K.143, D.146, H.147
- Chain V: E.45
Ligand excluded by PLIPSO4.56: 2 residues within 4Å:- Chain F: Q.6, N.7
Ligand excluded by PLIPSO4.57: 4 residues within 4Å:- Chain F: K.143, D.146, H.147
- Chain U: E.45
Ligand excluded by PLIPSO4.66: 2 residues within 4Å:- Chain G: Q.6, N.7
Ligand excluded by PLIPSO4.67: 4 residues within 4Å:- Chain G: K.143, D.146, H.147
- Chain W: E.45
Ligand excluded by PLIPSO4.76: 2 residues within 4Å:- Chain H: Q.6, N.7
Ligand excluded by PLIPSO4.77: 4 residues within 4Å:- Chain H: K.143, D.146, H.147
- Chain X: E.45
Ligand excluded by PLIPSO4.86: 2 residues within 4Å:- Chain I: Q.6, N.7
Ligand excluded by PLIPSO4.87: 4 residues within 4Å:- Chain I: K.143, D.146, H.147
- Chain Q: E.45
Ligand excluded by PLIPSO4.96: 2 residues within 4Å:- Chain J: Q.6, N.7
Ligand excluded by PLIPSO4.97: 4 residues within 4Å:- Chain J: K.143, D.146, H.147
- Chain R: E.45
Ligand excluded by PLIPSO4.106: 2 residues within 4Å:- Chain K: Q.6, N.7
Ligand excluded by PLIPSO4.107: 4 residues within 4Å:- Chain K: K.143, D.146, H.147
- Chain T: E.45
Ligand excluded by PLIPSO4.116: 2 residues within 4Å:- Chain L: Q.6, N.7
Ligand excluded by PLIPSO4.117: 4 residues within 4Å:- Chain L: K.143, D.146, H.147
- Chain S: E.45
Ligand excluded by PLIPSO4.126: 2 residues within 4Å:- Chain M: Q.6, N.7
Ligand excluded by PLIPSO4.127: 4 residues within 4Å:- Chain D: E.45
- Chain M: K.143, D.146, H.147
Ligand excluded by PLIPSO4.136: 2 residues within 4Å:- Chain N: Q.6, N.7
Ligand excluded by PLIPSO4.137: 4 residues within 4Å:- Chain C: E.45
- Chain N: K.143, D.146, H.147
Ligand excluded by PLIPSO4.146: 2 residues within 4Å:- Chain O: Q.6, N.7
Ligand excluded by PLIPSO4.147: 4 residues within 4Å:- Chain A: E.45
- Chain O: K.143, D.146, H.147
Ligand excluded by PLIPSO4.156: 2 residues within 4Å:- Chain P: Q.6, N.7
Ligand excluded by PLIPSO4.157: 4 residues within 4Å:- Chain B: E.45
- Chain P: K.143, D.146, H.147
Ligand excluded by PLIPSO4.166: 2 residues within 4Å:- Chain Q: Q.6, N.7
Ligand excluded by PLIPSO4.167: 4 residues within 4Å:- Chain J: E.45
- Chain Q: K.143, D.146, H.147
Ligand excluded by PLIPSO4.176: 2 residues within 4Å:- Chain R: Q.6, N.7
Ligand excluded by PLIPSO4.177: 4 residues within 4Å:- Chain I: E.45
- Chain R: K.143, D.146, H.147
Ligand excluded by PLIPSO4.186: 2 residues within 4Å:- Chain S: Q.6, N.7
Ligand excluded by PLIPSO4.187: 4 residues within 4Å:- Chain K: E.45
- Chain S: K.143, D.146, H.147
Ligand excluded by PLIPSO4.196: 2 residues within 4Å:- Chain T: Q.6, N.7
Ligand excluded by PLIPSO4.197: 4 residues within 4Å:- Chain L: E.45
- Chain T: K.143, D.146, H.147
Ligand excluded by PLIPSO4.206: 2 residues within 4Å:- Chain U: Q.6, N.7
Ligand excluded by PLIPSO4.207: 4 residues within 4Å:- Chain E: E.45
- Chain U: K.143, D.146, H.147
Ligand excluded by PLIPSO4.216: 2 residues within 4Å:- Chain V: Q.6, N.7
Ligand excluded by PLIPSO4.217: 4 residues within 4Å:- Chain F: E.45
- Chain V: K.143, D.146, H.147
Ligand excluded by PLIPSO4.226: 2 residues within 4Å:- Chain W: Q.6, N.7
Ligand excluded by PLIPSO4.227: 4 residues within 4Å:- Chain H: E.45
- Chain W: K.143, D.146, H.147
Ligand excluded by PLIPSO4.236: 2 residues within 4Å:- Chain X: Q.6, N.7
Ligand excluded by PLIPSO4.237: 4 residues within 4Å:- Chain G: E.45
- Chain X: K.143, D.146, H.147
Ligand excluded by PLIP- 48 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 3 residues within 4Å:- Chain A: E.11, A.14, R.18
Ligand excluded by PLIPEDO.9: 2 residues within 4Å:- Chain A: V.101, K.104
Ligand excluded by PLIPEDO.18: 3 residues within 4Å:- Chain B: E.11, A.14, R.18
Ligand excluded by PLIPEDO.19: 2 residues within 4Å:- Chain B: V.101, K.104
Ligand excluded by PLIPEDO.28: 3 residues within 4Å:- Chain C: E.11, A.14, R.18
Ligand excluded by PLIPEDO.29: 2 residues within 4Å:- Chain C: V.101, K.104
Ligand excluded by PLIPEDO.38: 3 residues within 4Å:- Chain D: E.11, A.14, R.18
Ligand excluded by PLIPEDO.39: 2 residues within 4Å:- Chain D: V.101, K.104
Ligand excluded by PLIPEDO.48: 3 residues within 4Å:- Chain E: E.11, A.14, R.18
Ligand excluded by PLIPEDO.49: 2 residues within 4Å:- Chain E: V.101, K.104
Ligand excluded by PLIPEDO.58: 3 residues within 4Å:- Chain F: E.11, A.14, R.18
Ligand excluded by PLIPEDO.59: 2 residues within 4Å:- Chain F: V.101, K.104
Ligand excluded by PLIPEDO.68: 3 residues within 4Å:- Chain G: E.11, A.14, R.18
Ligand excluded by PLIPEDO.69: 2 residues within 4Å:- Chain G: V.101, K.104
Ligand excluded by PLIPEDO.78: 3 residues within 4Å:- Chain H: E.11, A.14, R.18
Ligand excluded by PLIPEDO.79: 2 residues within 4Å:- Chain H: V.101, K.104
Ligand excluded by PLIPEDO.88: 3 residues within 4Å:- Chain I: E.11, A.14, R.18
Ligand excluded by PLIPEDO.89: 2 residues within 4Å:- Chain I: V.101, K.104
Ligand excluded by PLIPEDO.98: 3 residues within 4Å:- Chain J: E.11, A.14, R.18
Ligand excluded by PLIPEDO.99: 2 residues within 4Å:- Chain J: V.101, K.104
Ligand excluded by PLIPEDO.108: 3 residues within 4Å:- Chain K: E.11, A.14, R.18
Ligand excluded by PLIPEDO.109: 2 residues within 4Å:- Chain K: V.101, K.104
Ligand excluded by PLIPEDO.118: 3 residues within 4Å:- Chain L: E.11, A.14, R.18
Ligand excluded by PLIPEDO.119: 2 residues within 4Å:- Chain L: V.101, K.104
Ligand excluded by PLIPEDO.128: 3 residues within 4Å:- Chain M: E.11, A.14, R.18
Ligand excluded by PLIPEDO.129: 2 residues within 4Å:- Chain M: V.101, K.104
Ligand excluded by PLIPEDO.138: 3 residues within 4Å:- Chain N: E.11, A.14, R.18
Ligand excluded by PLIPEDO.139: 2 residues within 4Å:- Chain N: V.101, K.104
Ligand excluded by PLIPEDO.148: 3 residues within 4Å:- Chain O: E.11, A.14, R.18
Ligand excluded by PLIPEDO.149: 2 residues within 4Å:- Chain O: V.101, K.104
Ligand excluded by PLIPEDO.158: 3 residues within 4Å:- Chain P: E.11, A.14, R.18
Ligand excluded by PLIPEDO.159: 2 residues within 4Å:- Chain P: V.101, K.104
Ligand excluded by PLIPEDO.168: 3 residues within 4Å:- Chain Q: E.11, A.14, R.18
Ligand excluded by PLIPEDO.169: 2 residues within 4Å:- Chain Q: V.101, K.104
Ligand excluded by PLIPEDO.178: 3 residues within 4Å:- Chain R: E.11, A.14, R.18
Ligand excluded by PLIPEDO.179: 2 residues within 4Å:- Chain R: V.101, K.104
Ligand excluded by PLIPEDO.188: 3 residues within 4Å:- Chain S: E.11, A.14, R.18
Ligand excluded by PLIPEDO.189: 2 residues within 4Å:- Chain S: V.101, K.104
Ligand excluded by PLIPEDO.198: 3 residues within 4Å:- Chain T: E.11, A.14, R.18
Ligand excluded by PLIPEDO.199: 2 residues within 4Å:- Chain T: V.101, K.104
Ligand excluded by PLIPEDO.208: 3 residues within 4Å:- Chain U: E.11, A.14, R.18
Ligand excluded by PLIPEDO.209: 2 residues within 4Å:- Chain U: V.101, K.104
Ligand excluded by PLIPEDO.218: 3 residues within 4Å:- Chain V: E.11, A.14, R.18
Ligand excluded by PLIPEDO.219: 2 residues within 4Å:- Chain V: V.101, K.104
Ligand excluded by PLIPEDO.228: 3 residues within 4Å:- Chain W: E.11, A.14, R.18
Ligand excluded by PLIPEDO.229: 2 residues within 4Å:- Chain W: V.101, K.104
Ligand excluded by PLIPEDO.238: 3 residues within 4Å:- Chain X: E.11, A.14, R.18
Ligand excluded by PLIPEDO.239: 2 residues within 4Å:- Chain X: V.101, K.104
Ligand excluded by PLIP- 24 x CL: CHLORIDE ION(Non-functional Binders)
CL.10: 3 residues within 4Å:- Chain A: D.80
- Chain V: Q.82
- Ligands: CD.3
Ligand excluded by PLIPCL.20: 3 residues within 4Å:- Chain B: D.80
- Chain W: Q.82
- Ligands: CD.13
Ligand excluded by PLIPCL.30: 3 residues within 4Å:- Chain C: D.80
- Chain X: Q.82
- Ligands: CD.23
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain D: D.80
- Chain U: Q.82
- Ligands: CD.33
Ligand excluded by PLIPCL.50: 3 residues within 4Å:- Chain E: D.80
- Chain Q: Q.82
- Ligands: CD.43
Ligand excluded by PLIPCL.60: 3 residues within 4Å:- Chain F: D.80
- Chain T: Q.82
- Ligands: CD.53
Ligand excluded by PLIPCL.70: 3 residues within 4Å:- Chain G: D.80
- Chain S: Q.82
- Ligands: CD.63
Ligand excluded by PLIPCL.80: 3 residues within 4Å:- Chain H: D.80
- Chain R: Q.82
- Ligands: CD.73
Ligand excluded by PLIPCL.90: 3 residues within 4Å:- Chain I: D.80
- Chain P: Q.82
- Ligands: CD.83
Ligand excluded by PLIPCL.100: 3 residues within 4Å:- Chain J: D.80
- Chain M: Q.82
- Ligands: CD.93
Ligand excluded by PLIPCL.110: 3 residues within 4Å:- Chain K: D.80
- Chain N: Q.82
- Ligands: CD.103
Ligand excluded by PLIPCL.120: 3 residues within 4Å:- Chain L: D.80
- Chain O: Q.82
- Ligands: CD.113
Ligand excluded by PLIPCL.130: 3 residues within 4Å:- Chain J: Q.82
- Chain M: D.80
- Ligands: CD.123
Ligand excluded by PLIPCL.140: 3 residues within 4Å:- Chain K: Q.82
- Chain N: D.80
- Ligands: CD.133
Ligand excluded by PLIPCL.150: 3 residues within 4Å:- Chain L: Q.82
- Chain O: D.80
- Ligands: CD.143
Ligand excluded by PLIPCL.160: 3 residues within 4Å:- Chain I: Q.82
- Chain P: D.80
- Ligands: CD.153
Ligand excluded by PLIPCL.170: 3 residues within 4Å:- Chain E: Q.82
- Chain Q: D.80
- Ligands: CD.163
Ligand excluded by PLIPCL.180: 3 residues within 4Å:- Chain H: Q.82
- Chain R: D.80
- Ligands: CD.173
Ligand excluded by PLIPCL.190: 3 residues within 4Å:- Chain G: Q.82
- Chain S: D.80
- Ligands: CD.183
Ligand excluded by PLIPCL.200: 3 residues within 4Å:- Chain F: Q.82
- Chain T: D.80
- Ligands: CD.193
Ligand excluded by PLIPCL.210: 3 residues within 4Å:- Chain D: Q.82
- Chain U: D.80
- Ligands: CD.203
Ligand excluded by PLIPCL.220: 3 residues within 4Å:- Chain A: Q.82
- Chain V: D.80
- Ligands: CD.213
Ligand excluded by PLIPCL.230: 3 residues within 4Å:- Chain B: Q.82
- Chain W: D.80
- Ligands: CD.223
Ligand excluded by PLIPCL.240: 3 residues within 4Å:- Chain C: Q.82
- Chain X: D.80
- Ligands: CD.233
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Abe, S. et al., Coordination design of cadmium ions at the 4-fold axis channel of the apo-ferritin cage. Dalton Trans (2019)
- Release Date
- 2019-12-11
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-24-mer
- Ligands
- 120 x CD: CADMIUM ION(Non-covalent)
- 48 x SO4: SULFATE ION(Non-functional Binders)
- 48 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 24 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Abe, S. et al., Coordination design of cadmium ions at the 4-fold axis channel of the apo-ferritin cage. Dalton Trans (2019)
- Release Date
- 2019-12-11
- Peptides
- Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
AI
AJ
AK
AL
AM
AN
AO
AP
AQ
AR
AS
AT
AU
AV
AW
AX
A