SMTL ID : 6jev.1 (1 other biounit)

K2U bound crystal structure of class I type a peptide deformylase from Acinetobacter baumanii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.49, C.90, H.132, H.136 Ligands: K2U.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.90, A:H.132, A:H.136

1 x K2U: (3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid(Non-covalent)

K2U.2: 17 residues within 4Å: Chain A: P.41, G.42, I.43, G.44, Q.49, Y.86, E.88, G.89, C.90, L.91, Y.97, V.128, C.129, H.132, E.133, H.136 Ligands: ZN.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.86, A:E.88, A:V.128 Hydrogen bonds: A:I.43, A:G.44, A:Q.49, A:L.91 Salt bridges: A:H.132, A:H.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, I.H. et al., K2U bound crystal peptide deformylase from Acinetobacter baumanii. To be published

Release Date

2020-02-12

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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