SMTL ID : 6jf7.1

K3U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.54, C.102, H.144, H.148 Ligands: K3U.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.102, A:H.144, A:H.148 ZN.3: 5 residues within 4Å: Chain B: Q.54, C.102, H.144, H.148 Ligands: K3U.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.102, B:H.144, B:H.148

2 x K3U: S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate(Non-covalent)

K3U.2: 18 residues within 4Å: Chain A: N.46, G.47, V.48, G.49, I.50, Q.54, N.69, E.100, G.101, C.102, L.103, R.109, F.137, I.141, H.144, E.145, H.148 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.48, A:E.100, A:L.103, A:F.137, A:H.144 Hydrogen bonds: A:V.48 Halogen bonds: A:E.145 K3U.4: 17 residues within 4Å: Chain B: N.46, G.47, V.48, G.49, Q.54, R.67, E.100, G.101, C.102, L.103, F.137, R.140, I.141, H.144, E.145, H.148 Ligands: ZN.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.48, B:V.48, B:E.100, B:L.103, B:F.137, B:I.141, B:H.144 Hydrogen bonds: B:V.48, B:R.67 Halogen bonds: B:C.102, B:E.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jung, K.H. et al., K3U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii. To be published

Release Date

2020-02-12

Peptides

Peptide deformylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptide deformylase

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