SMTL ID : 6jfg.1

K1U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.65, C.111, H.154, H.158 Ligands: K1U.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.111, A:H.154, A:H.158

1 x K1U: (3R)-3-benzyl-4-oxo-4-[(2-oxo-2-phenylethyl)sulfanyl]butanoic acid(Non-covalent)

K1U.2: 16 residues within 4Å: Chain A: S.57, G.58, V.59, G.60, Q.65, L.105, E.109, G.110, C.111, L.112, Y.147, I.150, H.154, E.155, H.158 Ligands: NI.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.59, A:L.105, A:E.109, A:E.109, A:L.112, A:I.150, A:H.154 Hydrogen bonds: A:V.59, A:G.60, A:Q.65, A:L.112, A:Y.147, A:E.155 Salt bridges: A:H.154, A:H.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, I.H. et al., K1U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus. To be published

Release Date

2020-02-12

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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