SMTL ID : 6jfk.1

GDP bound Mitofusin2 (MFN2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: T.91, S.92, N.93, G.94, K.95, S.96, T.97, S.110, G.111, I.112, N.244, R.245, D.247, S.291, A.292, K.293 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:S.92, A:G.94, A:K.95, A:S.96, A:T.97, A:T.97, A:S.110, A:G.111, A:N.244, A:R.245, A:R.245, A:S.291, A:A.292, A:K.293 Water bridges: A:T.91, A:K.95, A:S.96, A:S.96, A:P.109, A:T.116, A:K.293, A:K.293 Salt bridges: A:K.95, A:D.247 pi-Cation interactions: A:R.245

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 4 residues within 4Å: Chain A: R.90, M.220, Q.221, T.222 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.221, A:T.222 Salt bridges: A:R.90

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: A.250, S.251, P.253 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.251 GOL.4: 4 residues within 4Å: Chain A: A.312, L.313, A.314, E.315 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.312 GOL.5: 5 residues within 4Å: Chain A: Q.31, Y.35, E.38, K.418, W.421 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.38, A:K.418 GOL.6: 3 residues within 4Å: Chain A: Q.325, N.326, R.329 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.325, A:N.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y.J. et al., Structural insights of human mitofusin-2 into mitochondrial fusion and CMT2A onset. Nat Commun (2019)

Release Date

2019-11-13

Peptides

Mitofusin-2,cDNA FLJ57997, highly similar to Transmembrane GTPase MFN2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitofusin-2,cDNA FLJ57997, highly similar to Transmembrane GTPase MFN2

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