SMTL ID : 6jfo.1

Formyl-Met-Ala-Ser bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x FME- ALA- SER: FME-ALA-SER(Non-covalent)

FME-ALA-SER.1: 14 residues within 4Å: Chain A: R.56, S.57, G.58, V.59, G.60, Q.65, L.105, G.110, C.111, L.112, V.151, H.154, E.155 Ligands: MG.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.57, A:S.57, A:V.59, A:G.60, A:Q.65, A:G.110, A:L.112, A:E.155 Water bridges: A:S.57, A:G.110

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: Q.65, C.111, H.154, H.158 Ligands: FME-ALA-SER.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.154, A:H.158, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, I.H. et al., Formyl-Met-Ala-Ser bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus. To be published

Release Date

2020-02-12

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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