SMTL ID : 6jfq.1

K2U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: Q.65, C.111, H.154, H.158 Ligands: K2U.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.111, A:H.154, A:H.158, H2O.3

1 x K2U: (3~{R},4~{R})-4-oxidanyl-3-(phenylmethyl)-4-(phenylmethylsulfanyl)butanoic acid(Non-covalent)

K2U.2: 14 residues within 4Å: Chain A: S.57, G.58, V.59, G.60, Q.65, L.105, E.109, G.110, C.111, L.112, H.154, E.155, H.158 Ligands: NI.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.59, A:L.105, A:E.109, A:E.109, A:L.112 Hydrogen bonds: A:V.59, A:G.60, A:Q.65, A:L.112, A:E.155 Salt bridges: A:H.154, A:H.158 pi-Stacking: A:H.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, I.H. et al., K2U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus. To be published

Release Date

2020-02-12

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase