SMTL ID : 6jfr.1

K3U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 6 residues within 4Å: Chain A: Q.65, C.111, H.154, E.155, H.158 Ligands: K3U.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.111, A:H.154, A:H.158 NI.2: 2 residues within 4Å: Chain A: D.169, H.177 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.177

1 x K3U: S-(2-oxo-2-phenylethyl) (2R)-2-benzyl-4,4,4-trifluorobutanethioate(Non-covalent)

K3U.3: 15 residues within 4Å: Chain A: S.57, G.58, V.59, G.60, L.61, Q.65, L.105, E.109, G.110, C.111, L.112, H.154, E.155, H.158 Ligands: NI.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.105, A:E.109, A:L.112, A:H.154 Hydrogen bonds: A:V.59, A:G.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, I.H. et al., K3U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus. To be published

Release Date

2020-02-12

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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