- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.36 Å
- Oligo State
- monomer
- Ligands
- 2 x GLC: alpha-D-glucopyranose(Non-covalent)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 5 residues within 4Å:- Chain A: E.224, N.225, N.226, S.259
- Ligands: SO4.20
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:N.226
- Water bridges: A:N.225, A:K.264, A:K.264, A:K.264
NAG.4: 2 residues within 4Å:- Chain A: N.604
- Ligands: GOL.21
No protein-ligand interaction detected (PLIP)- 16 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 2 residues within 4Å:- Chain A: K.14, P.15
Ligand excluded by PLIPSO4.6: 2 residues within 4Å:- Chain A: K.283, R.355
Ligand excluded by PLIPSO4.7: 3 residues within 4Å:- Chain A: T.28, A.30, F.53
Ligand excluded by PLIPSO4.8: 4 residues within 4Å:- Chain A: K.324, Y.325, Q.326, Q.327
Ligand excluded by PLIPSO4.9: 3 residues within 4Å:- Chain A: K.83, M.86, Y.367
Ligand excluded by PLIPSO4.10: 4 residues within 4Å:- Chain A: R.123, I.173, L.597, G.598
Ligand excluded by PLIPSO4.11: 5 residues within 4Å:- Chain A: Y.126, K.129, E.133, D.187
- Ligands: GOL.31
Ligand excluded by PLIPSO4.12: 5 residues within 4Å:- Chain A: L.137, Q.375, K.378, E.380, H.381
Ligand excluded by PLIPSO4.13: 3 residues within 4Å:- Chain A: A.200, G.201, K.202
Ligand excluded by PLIPSO4.14: 3 residues within 4Å:- Chain A: R.156, I.229, I.237
Ligand excluded by PLIPSO4.15: 3 residues within 4Å:- Chain A: T.298, P.299, A.300
Ligand excluded by PLIPSO4.16: 6 residues within 4Å:- Chain A: G.301, S.302, D.303, Y.304, S.305, Q.327
Ligand excluded by PLIPSO4.17: 3 residues within 4Å:- Chain A: P.342, M.343, S.344
Ligand excluded by PLIPSO4.18: 3 residues within 4Å:- Chain A: L.601, T.602
- Ligands: GOL.21
Ligand excluded by PLIPSO4.19: 3 residues within 4Å:- Chain A: G.566, N.604, A.605
Ligand excluded by PLIPSO4.20: 3 residues within 4Å:- Chain A: N.225, N.226
- Ligands: NAG.3
Ligand excluded by PLIP- 11 x GOL: GLYCEROL(Non-functional Binders)
GOL.21: 3 residues within 4Å:- Chain A: N.604
- Ligands: NAG.4, SO4.18
1 PLIP interactions:1 interactions with chain A- Water bridges: A:T.602
GOL.22: 3 residues within 4Å:- Chain A: P.15, V.16, E.17
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.16, A:E.17
GOL.23: 6 residues within 4Å:- Chain A: D.47, V.48, D.51, N.52, Y.325, Q.326
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.51, A:D.51, A:N.52, A:Y.325, A:Q.326
GOL.24: 3 residues within 4Å:- Chain A: G.262, V.263, K.264
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.264
GOL.25: 4 residues within 4Å:- Chain A: E.364, N.365, P.366, Y.367
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.367, A:Y.367
GOL.26: 3 residues within 4Å:- Chain A: K.416, F.475, G.479
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.416, A:K.416, A:F.475
GOL.27: 4 residues within 4Å:- Chain A: S.422, Y.429, E.469, H.491
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.469, A:E.469, A:E.469, A:H.491
GOL.28: 2 residues within 4Å:- Chain A: G.443, R.444
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.444
- Water bridges: A:T.442
GOL.29: 3 residues within 4Å:- Chain A: E.437, W.438, Q.439
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:W.438, A:Q.439
- Water bridges: A:E.437, A:E.437
GOL.30: 4 residues within 4Å:- Chain A: A.468, E.469, N.470, P.471
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.469, A:N.470
GOL.31: 8 residues within 4Å:- Chain A: K.129, E.133, P.182, G.183, G.186, D.187, K.204
- Ligands: SO4.11
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.133, A:E.133, A:G.186, A:D.187, A:D.187, A:K.204
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.32: 7 residues within 4Å:- Chain A: D.124, Y.126, L.127, R.130, R.390, K.391, F.565
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.124, A:R.130, A:R.390, A:K.391
1PE.33: 3 residues within 4Å:- Chain A: Y.108, R.444
- Ligands: 1PE.34
No protein-ligand interaction detected (PLIP)1PE.34: 4 residues within 4Å:- Chain A: R.66, K.67, G.68
- Ligands: 1PE.33
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.66
1PE.35: 6 residues within 4Å:- Chain A: R.382, G.448, T.449, E.453, A.457, E.553
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.449, A:E.553
- Water bridges: A:E.553
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.36: 4 residues within 4Å:- Chain A: N.502, V.533, S.578, V.579
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.533, A:V.579
- Hydrogen bonds: A:V.579
ACT.37: 4 residues within 4Å:- Chain A: L.594, F.595, R.596, Y.599
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.596
- Salt bridges: A:R.596
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.36 Å
- Oligo State
- monomer
- Ligands
- 2 x GLC: alpha-D-glucopyranose(Non-covalent)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 11 x GOL: GLYCEROL(Non-functional Binders)
- 4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A