- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- monomer
- Ligands
- 1 x U1Y- BGC: beta-D-glucopyranose-(1-6)-methyl 6-thio-beta-D-glucopyranoside(Non-covalent)
- 9 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.2: 4 residues within 4Å:- Chain A: G.109, L.376, G.377, R.382
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.382, A:R.382
1PE.3: 8 residues within 4Å:- Chain A: E.40, L.42, G.60, S.63, Y.290, E.291, N.323
- Ligands: U1Y-BGC.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.40, A:Y.290, A:N.323
1PE.4: 5 residues within 4Å:- Chain A: V.16, F.358, T.359, G.361, E.364
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:F.358, A:E.364
- Water bridges: A:R.19, A:R.19
1PE.5: 3 residues within 4Å:- Chain A: P.411, K.412, K.413
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.412, A:K.413, A:K.413
1PE.6: 6 residues within 4Å:- Chain A: K.129, E.133, G.186, D.187, A.200, K.204
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:E.133, A:D.187
- Water bridges: A:K.129, A:E.133, A:E.133, A:N.203, A:K.204
1PE.7: 3 residues within 4Å:- Chain A: T.28, L.29
- Ligands: GOL.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.29
1PE.8: 4 residues within 4Å:- Chain A: F.467, A.468, E.469, N.470
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.469, A:N.470, A:N.470
1PE.9: 4 residues within 4Å:- Chain A: R.123, R.172, S.176, M.177
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.123, A:S.176
1PE.10: 1 residues within 4Å:- Chain A: N.323
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.323
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.11: 12 residues within 4Å:- Chain A: W.160, R.162, H.211, D.215, N.223, I.255, S.256, Y.257, S.258, D.289, E.495
- Ligands: U1Y-BGC.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:R.162, A:N.223, A:N.223, A:Y.257, A:S.258, A:D.289, A:D.289
- Water bridges: A:D.215, A:E.224
GOL.12: 5 residues within 4Å:- Chain A: G.25, R.26, M.27, T.28
- Ligands: 1PE.7
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.26, A:R.89
GOL.13: 5 residues within 4Å:- Chain A: Q.379, R.382, G.448, T.449, E.553
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Q.379, A:T.449, A:E.553
- Water bridges: A:Q.379, A:Q.379, A:E.553, A:Q.555
GOL.14: 8 residues within 4Å:- Chain A: E.490, H.491, Y.493, K.497, G.498, N.500, P.506, R.530
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.491, A:G.498, A:N.500, A:R.530
GOL.15: 2 residues within 4Å:- Chain A: R.390, K.391
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.390, A:R.390, A:K.391
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.16: 2 residues within 4Å:- Chain A: G.201, K.202
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.202
- Water bridges: A:N.203
SO4.17: 3 residues within 4Å:- Chain A: T.28, A.30, F.53
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.28
- Water bridges: A:L.29
SO4.18: 3 residues within 4Å:- Chain A: P.342, M.343, S.344
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:M.343, A:S.344
- 7 x ACT: ACETATE ION(Non-functional Binders)
ACT.19: 3 residues within 4Å:- Chain A: Q.379, E.380, D.383
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:E.380
- Water bridges: A:Q.379, A:D.383
ACT.20: 3 residues within 4Å:- Chain A: Y.429, E.469, H.491
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.491
- Water bridges: A:S.422, A:Y.429
ACT.21: 1 residues within 4Å:- Chain A: K.412
2 PLIP interactions:2 interactions with chain A- Water bridges: A:K.412
- Salt bridges: A:K.412
ACT.22: 2 residues within 4Å:- Chain A: E.17, K.283
2 PLIP interactions:2 interactions with chain A- Water bridges: A:K.283
- Salt bridges: A:R.355
ACT.23: 2 residues within 4Å:- Chain A: K.281, K.283
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:K.281, A:K.283
ACT.24: 2 residues within 4Å:- Chain A: D.303, Y.306
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.303
ACT.25: 5 residues within 4Å:- Chain A: L.137, Q.375, K.378, E.380, H.381
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.137
- Water bridges: A:H.381
- Salt bridges: A:K.378, A:H.381
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- monomer
- Ligands
- 1 x U1Y- BGC: beta-D-glucopyranose-(1-6)-methyl 6-thio-beta-D-glucopyranoside(Non-covalent)
- 9 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 7 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A