- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- monomer
- Ligands
- 1 x U2A- BGC: beta-D-glucopyranose-(1-2)-methyl 2-thio-beta-D-glucopyranoside(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 15 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 2 residues within 4Å:- Chain A: R.231, Y.275
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.231, A:R.231, A:Y.275
GOL.4: 3 residues within 4Å:- Chain A: N.230, R.231, N.261
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.231, A:N.261
GOL.5: 3 residues within 4Å:- Chain A: D.79, K.83, Y.367
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.79, A:A.368
GOL.6: 8 residues within 4Å:- Chain A: E.490, H.491, Y.493, K.497, G.498, N.500, P.506, R.530
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.490, A:E.490, A:H.491, A:K.497, A:N.500, A:R.530
GOL.7: 5 residues within 4Å:- Chain A: E.387, R.390, K.391, F.565
- Ligands: SO4.18
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.390, A:R.390, A:K.391
- Water bridges: A:D.124, A:D.124
GOL.8: 5 residues within 4Å:- Chain A: R.123, I.173, R.570, L.597, G.598
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.123, A:R.570
GOL.9: 11 residues within 4Å:- Chain A: W.160, R.162, H.211, D.215, N.223, I.255, S.256, Y.257, S.258, D.289
- Ligands: U2A-BGC.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:R.162, A:N.223, A:Y.257, A:S.258, A:D.289, A:D.289
- Water bridges: A:E.224, A:E.224, A:E.224
GOL.10: 5 residues within 4Å:- Chain A: Q.379, R.382, G.448, T.449, E.553
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.449, A:T.449, A:S.552
- Water bridges: A:Q.379, A:E.553, A:Q.555, A:Q.555
GOL.11: 1 residues within 4Å:- Chain A: K.412
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.412
- Water bridges: A:K.412, A:D.564
GOL.12: 3 residues within 4Å:- Chain A: P.411, K.412, K.413
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.412, A:K.413, A:K.413
- Water bridges: A:K.412
GOL.13: 2 residues within 4Å:- Chain A: K.281, K.283
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.283
GOL.14: 3 residues within 4Å:- Chain A: P.15, V.16, E.17
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.16, A:E.17
- Water bridges: A:E.17, A:E.17
GOL.15: 4 residues within 4Å:- Chain A: G.186, D.187, A.200, K.204
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.187
- Water bridges: A:E.133, A:P.182
GOL.16: 5 residues within 4Å:- Chain A: R.156, D.170, R.172, I.237, V.586
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.156, A:R.156, A:E.169, A:R.172, A:R.172
- Water bridges: A:R.171, A:N.236
GOL.17: 4 residues within 4Å:- Chain A: E.17, M.196, K.283, R.355
No protein-ligand interaction detected (PLIP)- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.18: 4 residues within 4Å:- Chain A: R.390, K.391, F.565
- Ligands: GOL.7
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.390, A:K.391
SO4.19: 3 residues within 4Å:- Chain A: A.200, G.201, K.202
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.202
- Water bridges: A:A.200, A:N.203
- Salt bridges: A:K.202
SO4.20: 3 residues within 4Å:- Chain A: P.342, M.343, S.344
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:M.343, A:S.344
SO4.21: 4 residues within 4Å:- Chain A: G.25, R.26, M.27, T.28
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.25
- Water bridges: A:R.89
SO4.22: 3 residues within 4Å:- Chain A: T.298, P.299, A.300
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.300
SO4.23: 3 residues within 4Å:- Chain A: D.588, A.589, H.590
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.589, A:H.590
SO4.24: 1 residues within 4Å:- Chain A: R.171
3 PLIP interactions:3 interactions with chain A- Water bridges: A:Q.175, A:Q.175
- Salt bridges: A:R.171
SO4.25: 2 residues within 4Å:- Chain A: R.386, Q.555
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.555
- Water bridges: A:R.386, A:R.386, A:R.386, A:R.386
- Salt bridges: A:R.386
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- monomer
- Ligands
- 1 x U2A- BGC: beta-D-glucopyranose-(1-2)-methyl 2-thio-beta-D-glucopyranoside(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 15 x GOL: GLYCEROL(Non-functional Binders)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A