- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 1 x U2A- BGC: beta-D-glucopyranose-(1-2)-methyl 2-thio-beta-D-glucopyranoside(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 13 residues within 4Å:- Chain A: W.160, R.162, H.211, D.215, N.223, E.224, I.255, S.256, Y.257, S.258, D.289, E.495
- Ligands: U2A-BGC.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:R.162, A:N.223, A:N.223, A:E.224, A:Y.257, A:S.258, A:D.289, A:D.289, A:E.495
GOL.4: 4 residues within 4Å:- Chain A: E.387, R.390, K.391, F.565
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.390, A:R.390, A:K.391
- Water bridges: A:K.391
GOL.5: 2 residues within 4Å:- Chain A: T.333, N.337
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.337, A:N.337
GOL.6: 3 residues within 4Å:- Chain A: P.411, K.412, K.413
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.412, A:K.413, A:K.413
GOL.7: 5 residues within 4Å:- Chain A: R.156, D.170, R.171, R.172, N.236
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:R.156, A:D.170, A:R.171, A:R.171, A:R.172, A:N.236
- Water bridges: A:R.156, A:R.171
- 9 x ACT: ACETATE ION(Non-functional Binders)
ACT.8: 2 residues within 4Å:- Chain A: R.26, T.28
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:T.28
- Hydrogen bonds: A:M.27
- Water bridges: A:R.89
ACT.9: 3 residues within 4Å:- Chain A: Q.326, I.329, S.330
No protein-ligand interaction detected (PLIP)ACT.10: 5 residues within 4Å:- Chain A: L.137, Q.375, K.378, E.380, H.381
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.137
- Water bridges: A:E.133, A:H.381
- Salt bridges: A:K.378, A:H.381
ACT.11: 2 residues within 4Å:- Chain A: S.87, R.89
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.89, A:R.89
ACT.12: 3 residues within 4Å:- Chain A: Y.126, K.129, E.133
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.126
- Salt bridges: A:K.129
ACT.13: 2 residues within 4Å:- Chain A: K.281, K.283
4 PLIP interactions:4 interactions with chain A- Water bridges: A:K.283, A:K.283
- Salt bridges: A:K.281, A:K.283
ACT.14: 2 residues within 4Å:- Chain A: T.401, S.402
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.402, A:S.402
ACT.15: 3 residues within 4Å:- Chain A: T.298, P.299, A.300
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:T.298
- Hydrogen bonds: A:A.300
ACT.16: 5 residues within 4Å:- Chain A: L.594, F.595, R.596, Y.599
- Ligands: 1PE.23
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:R.596, A:Y.599
- Hydrogen bonds: A:R.596
- Salt bridges: A:R.596
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.17: 4 residues within 4Å:- Chain A: T.28, A.30, F.53
- Ligands: 1PE.36
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.28
- Water bridges: A:L.29
SO4.18: 3 residues within 4Å:- Chain A: P.342, M.343, S.344
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:M.343, A:S.344
SO4.19: 3 residues within 4Å:- Chain A: A.200, G.201, K.202
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.202
- Water bridges: A:A.200, A:N.203
- 17 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.20: 2 residues within 4Å:- Chain A: E.73, D.76
Ligand excluded by PLIP1PE.21: 3 residues within 4Å:- Chain A: E.17, M.196
- Ligands: 1PE.33
Ligand excluded by PLIP1PE.22: 2 residues within 4Å:- Chain A: Y.306, K.309
Ligand excluded by PLIP1PE.23: 7 residues within 4Å:- Chain A: Q.535, L.538, A.539, L.594, F.595
- Ligands: ACT.16, 1PE.35
Ligand excluded by PLIP1PE.24: 5 residues within 4Å:- Chain A: A.468, E.469, N.470, P.471, F.475
Ligand excluded by PLIP1PE.25: 4 residues within 4Å:- Chain A: S.422, Y.429, E.469, H.491
Ligand excluded by PLIP1PE.26: 3 residues within 4Å:- Chain A: K.456, V.465, F.467
Ligand excluded by PLIP1PE.27: 3 residues within 4Å:- Chain A: D.588, A.589, H.590
Ligand excluded by PLIP1PE.28: 4 residues within 4Å:- Chain A: R.123, R.570, L.597, G.598
Ligand excluded by PLIP1PE.29: 2 residues within 4Å:- Chain A: V.43, K.324
Ligand excluded by PLIP1PE.30: 2 residues within 4Å:- Chain A: K.83, Y.367
Ligand excluded by PLIP1PE.31: 4 residues within 4Å:- Chain A: G.109, L.376, G.377, R.382
Ligand excluded by PLIP1PE.32: 4 residues within 4Å:- Chain A: G.186, D.187, A.200, K.204
Ligand excluded by PLIP1PE.33: 4 residues within 4Å:- Chain A: P.15, V.16, E.17
- Ligands: 1PE.21
Ligand excluded by PLIP1PE.34: 8 residues within 4Å:- Chain A: E.490, H.491, Y.493, K.497, G.498, N.500, P.506, R.530
Ligand excluded by PLIP1PE.35: 7 residues within 4Å:- Chain A: L.510, Q.514, Q.535, P.536, A.539, L.594
- Ligands: 1PE.23
Ligand excluded by PLIP1PE.36: 3 residues within 4Å:- Chain A: T.28, L.29
- Ligands: SO4.17
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 1 x U2A- BGC: beta-D-glucopyranose-(1-2)-methyl 2-thio-beta-D-glucopyranoside(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 9 x ACT: ACETATE ION(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 17 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A