- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- monomer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 1 x LAM: 4'-NITROPHENYL-S-(BETA-D-GLUCOPYRANOSYL)-(1-3)-(3-THIO-BETA-D-GLUCOPYRANOSYL)-(1-3)-BETA-D-GLUCOPYRANOSIDE(Non-covalent)
- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.5: 16 residues within 4Å:- Chain A: A.100, V.101, H.102, G.103, F.113, P.114, N.116, L.119, I.131, T.135, A.149, P.150, C.151, E.165, Y.167, L.180
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:V.101, A:E.165
- Hydrogen bonds: A:G.103, A:N.116, A:C.151
- Water bridges: A:N.116
1PE.6: 4 residues within 4Å:- Chain A: G.587, D.588, A.589
- Ligands: 1PE.8
No protein-ligand interaction detected (PLIP)1PE.7: 4 residues within 4Å:- Chain A: R.172, Q.175, N.244, K.248
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.244, A:K.248
1PE.8: 5 residues within 4Å:- Chain A: R.156, P.583, N.585, D.588
- Ligands: 1PE.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.156, A:N.585
1PE.9: 7 residues within 4Å:- Chain A: D.47, V.48, N.52, Y.325, Q.326, I.329, S.330
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.47, A:D.47, A:N.52, A:Y.325
1PE.10: 3 residues within 4Å:- Chain A: G.25, R.26, M.27
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.89
1PE.11: 3 residues within 4Å:- Chain A: P.15, V.16, E.17
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.16, A:E.17
1PE.12: 6 residues within 4Å:- Chain A: E.17, D.347, D.348, T.351, R.352, R.355
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.355, A:R.355
- 13 x ACT: ACETATE ION(Non-functional Binders)
ACT.13: 2 residues within 4Å:- Chain A: D.170, R.172
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.171
- Salt bridges: A:R.171, A:R.172
ACT.14: 2 residues within 4Å:- Chain A: R.171, R.172
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.171
ACT.15: 4 residues within 4Å:- Chain A: G.399, K.400, T.401, S.402
No protein-ligand interaction detected (PLIP)ACT.16: 2 residues within 4Å:- Chain A: T.297, Y.306
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.306
ACT.17: 3 residues within 4Å:- Chain A: P.411, K.412, K.413
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:K.412
- Hydrogen bonds: A:K.412, A:K.413
ACT.18: 2 residues within 4Å:- Chain A: R.390, K.391
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.390, A:K.391
ACT.19: 2 residues within 4Å:- Chain A: R.159, D.220
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.159
ACT.20: 2 residues within 4Å:- Chain A: E.291, N.323
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.323
- Water bridges: A:K.324
ACT.21: 2 residues within 4Å:- Chain A: K.309, L.313
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:K.309
ACT.22: 4 residues within 4Å:- Chain A: L.594, F.595, R.596, Y.599
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.596
- Salt bridges: A:R.596
ACT.23: 2 residues within 4Å:- Chain A: T.28, L.29
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.29
- Water bridges: A:A.30
ACT.24: 4 residues within 4Å:- Chain A: R.123, P.125, I.173, S.176
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.173
- Hydrogen bonds: A:S.176
ACT.25: 3 residues within 4Å:- Chain A: D.270, G.274, Y.275
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- monomer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 1 x LAM: 4'-NITROPHENYL-S-(BETA-D-GLUCOPYRANOSYL)-(1-3)-(3-THIO-BETA-D-GLUCOPYRANOSYL)-(1-3)-BETA-D-GLUCOPYRANOSIDE(Non-covalent)
- 8 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 13 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A