- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.82 Å
- Oligo State
- monomer
- Ligands
- 1 x U1Y- BGC: beta-D-glucopyranose-(1-6)-methyl 6-thio-beta-D-glucopyranoside(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 3 residues within 4Å:- Chain A: T.28, A.30, F.53
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.28, A:T.28
GOL.4: 11 residues within 4Å:- Chain A: W.160, R.162, H.211, D.215, N.223, I.255, S.256, Y.257, S.258, D.289
- Ligands: U1Y-BGC.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:R.162, A:N.223, A:N.223, A:Y.257, A:S.258, A:D.289, A:D.289
- Water bridges: A:W.160, A:E.224
GOL.5: 2 residues within 4Å:- Chain A: D.303, Y.306
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.303, A:D.303
GOL.6: 5 residues within 4Å:- Chain A: Q.379, R.382, G.448, T.449, E.553
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:T.449, A:S.552
- Water bridges: A:Q.379, A:Q.379, A:E.553, A:Q.555, A:Q.555
GOL.7: 2 residues within 4Å:- Chain A: K.281, K.283
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.283
- Water bridges: A:K.277, A:D.278
- 9 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.8: 4 residues within 4Å:- Chain A: W.290, E.291, R.295
- Ligands: U1Y-BGC.1
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.295, A:N.323, A:N.323
1PE.9: 5 residues within 4Å:- Chain A: E.17, M.196, K.283, R.355
- Ligands: 1PE.13
1 PLIP interactions:1 interactions with chain A- Water bridges: A:K.283
1PE.10: 4 residues within 4Å:- Chain A: E.387, R.390, K.391, F.565
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.390, A:R.390
- Water bridges: A:R.130, A:E.387
1PE.11: 5 residues within 4Å:- Chain A: R.130, E.380, D.383, L.384, E.387
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.387
- Water bridges: A:R.130, A:E.387
1PE.12: 3 residues within 4Å:- Chain A: P.411, K.412, K.413
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.412, A:K.413
1PE.13: 4 residues within 4Å:- Chain A: P.15, V.16, E.17
- Ligands: 1PE.9
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.16, A:E.17
- Water bridges: A:E.17, A:E.17
1PE.14: 2 residues within 4Å:- Chain A: N.337, G.338
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.337
1PE.15: 2 residues within 4Å:- Chain A: V.43, N.323
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.323
1PE.16: 6 residues within 4Å:- Chain A: K.202, N.365, Y.367, A.368, D.369
- Ligands: ACT.17
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.367
- Hydrogen bonds: A:N.365
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.17: 3 residues within 4Å:- Chain A: K.83, Y.367
- Ligands: 1PE.16
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:K.83
ACT.18: 4 residues within 4Å:- Chain A: G.25, R.26, M.27, T.28
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.89
- Salt bridges: A:R.89
ACT.19: 3 residues within 4Å:- Chain A: T.298, P.299, A.300
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.300
ACT.20: 4 residues within 4Å:- Chain A: A.267, N.268, Q.269, D.270
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Q.269
- Hydrogen bonds: A:Q.269, A:D.270
ACT.21: 2 residues within 4Å:- Chain A: N.337, G.339
No protein-ligand interaction detected (PLIP)ACT.22: 3 residues within 4Å:- Chain A: E.469, N.470, P.471
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.469, A:N.470, A:N.470
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.82 Å
- Oligo State
- monomer
- Ligands
- 1 x U1Y- BGC: beta-D-glucopyranose-(1-6)-methyl 6-thio-beta-D-glucopyranoside(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 9 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luang, S. et al., The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases. Nat Commun (2022)
- Release Date
- 2020-08-19
- Peptides
- BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A